Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi279g00034 ATGGAAGATGTAGCAGGTCTATTCGAGGCAGCAGGTTCAAGATTTACCTCATTAGAGCTTATTGGGCAGGGATCATTTGGAGATGTCTATAAAGGGTTTGACAAGGAGCTCAACAAACTAGTCGCCATCAAAGTGATCGATTTGGAAGAATCAGAGGATGAAATTGAGGATATTCAACAGGAAATTTCTGTTCTGTCACAATGTCGATGTCCATACATTACCGAGTATTATGGCTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCTGTTGCTGATCTAGTAGAATATGGGAGAATGTCCCAGGGGAAAATGGCAATAGTTGAGCACTGGGTACTCTATCTATTATCCAAGCTCCAATCAGGTACCCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGCGACTTGCTGCATGCTATTGATTACCTACATACTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTACTGACTGAGAATGGTGATGTAAAGTTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCGTTCTGGATGGCACCTGAGGTTATTCAGAATTCAGATGGATACAATGAGAAGGTTGCAGATATCTGGTCTATGGGGATTACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCCATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCTCCACAGCTAGATGAGCATTTTTCTCGTCCATTGAAAGAATTTGTTTCATTGTGTTTGAAGAAGGTGCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGGAATGCTAGGAAGAATCCAAAGCTAGCAGAAAGAATAAGGGAGCGTCCAAAGTACCAAATAAAGGAAGATTTGGAGACACCTAGAAGTGGCCCAAAGGGCGATCAGGGTAAAACCATGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGAGTACTGGAACCTTTCGTAGTGTTTCAAGACCACCTCAGTTTAGGGAAAAGAAAACTGAAGTTTCACATAATCAGCTTACCCAAAGAAAAGCTCCAGAGAGTGGCTATCAAGGGGGATCTGCCTATAGAAGTGCACATAATGAGTCACTTGAAAGTTCCTTTGGAAAAGACCTCAGAGTTCCTCACCATGATGAGCATCTGGATAATCACCTTGAAGAGGATGAATTATCTGGGAATGGATCAGGAACTGTCGTTATTCGATCTCCAAAAGGATCAAGGCCATCTGTATTTCGTGACCAAAGCTCCCAGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGCGGAACTGTTGTATTACGTGGCCAGCATGATGATTCTGATTCTTCATGGACATCAAAGTCCCGGCCGGGACTTCGTGACAGAAATTCAAATTCGTCACTGGAAGATAGTGCAGCAAACCTTGCTGAGGCAAAAGCTGCTATCCAAGCAGGGCTAAGGAAAGGGAATGCTCGAGAGAGATTTCCTCCCGGGAAAAGTGAACAGTGA 1563 0.4325 MEDVAGLFEAAGSRFTSLELIGQGSFGDVYKGFDKELNKLVAIKVIDLEESEDEIEDIQQEISVLSQCRCPYITEYYGSYLNQTKLWIIMEYMAGGSVADLVEYGRMSQGKMAIVEHWVLYLLSKLQSGTPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKVADIWSMGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPLKEFVSLCLKKVPAERPSAKELLKDRFIRNARKNPKLAERIRERPKYQIKEDLETPRSGPKGDQGKTMKSAGWDFSIGGSQSTGTFRSVSRPPQFREKKTEVSHNQLTQRKAPESGYQGGSAYRSAHNESLESSFGKDLRVPHHDEHLDNHLEEDELSGNGSGTVVIRSPKGSRPSVFRDQSSQSSSSYASFEDASSSGTVVLRGQHDDSDSSWTSKSRPGLRDRNSNSSLEDSAANLAEAKAAIQAGLRKGNARERFPPGKSEQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi279g00034 520 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 511 - -
Sebi279g00034 520 Gene3D Transferase(Phosphotransferase) domain 1 122 312 - -
Sebi279g00034 520 ProSiteProfiles Protein kinase domain profile. 15 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi279g00034 520 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Sebi279g00034 520 MobiDBLite consensus disorder prediction 291 314 - -
Sebi279g00034 520 SUPERFAMILY Protein kinase-like (PK-like) 12 312 IPR011009 -
Sebi279g00034 520 MobiDBLite consensus disorder prediction 291 490 - -
Sebi279g00034 520 MobiDBLite consensus disorder prediction 361 385 - -
Sebi279g00034 520 CDD STKc_MST3_like 13 303 - -
Sebi279g00034 520 MobiDBLite consensus disorder prediction 329 345 - -
Sebi279g00034 520 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Sebi279g00034 520 MobiDBLite consensus disorder prediction 386 411 - -
Sebi279g00034 520 SMART serkin_6 15 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi279g00034 520 MobiDBLite consensus disorder prediction 417 490 - -
Sebi279g00034 520 Coils Coil 41 68 - -
Sebi279g00034 520 Pfam Protein kinase domain 16 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi279g00034 Sebi-Chr279 868675 882273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi279g00034 1 518 MAP Kinase Kinase Kinase Kinase AT3G15220 66.243 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Sebi279g00034 Pkinase 3.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi279g00034 K08838 - gmx:100814188 804.283