Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi279g00027 ATGGAGAGGAAGCATAAGGCAATTGAGAAGGTGAGGAAGGACAACACATTTAAAGAAATAGAAGAGGAGGAGGATGAAAGTGGTGGTGGTGATGATGGTGTTCCTGCAGAAGATGAGAAGAAGAAAGGTGCTGATGTGAGTGGGAGGAAAGGGTCAAGTTGGGGTGGAAGAGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGATGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCATCATCTGTTGTGGTTGCAGGGCTCAGCCAGAGGTTTTGCCAGCAATGTAGCAGGTTTTCAATCCCATCATCTTAA 348 0.4741 MERKHKAIEKVRKDNTFKEIEEEEDESGGGDDGVPAEDEKKKGADVSGRKGSSWGGRVSPPSCQAERCDADLTVAKRYHRRHKVCELHSKASSVVVAGLSQRFCQQCSRFSIPSS 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi279g00027 115 Gene3D - 58 112 IPR036893 GO:0003677|GO:0005634
Sebi279g00027 115 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 41 110 IPR044817 GO:0003677
Sebi279g00027 115 MobiDBLite consensus disorder prediction 33 47 - -
Sebi279g00027 115 MobiDBLite consensus disorder prediction 1 64 - -
Sebi279g00027 115 SUPERFAMILY SBT domain 61 112 IPR036893 GO:0003677|GO:0005634
Sebi279g00027 115 MobiDBLite consensus disorder prediction 1 19 - -
Sebi279g00027 115 ProSiteProfiles Zinc finger SBP-type profile. 60 115 IPR004333 GO:0003677
Sebi279g00027 115 Pfam SBP domain 63 110 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi279g00027 Sebi-Chr279 656147 656494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi279g00027 52 113 SBP-box Gene Family AT1G02065 70.968 4.95e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi279g00027 SBP 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi279g00027 - - aprc:113864686 140.584