Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi279g00024 ATGGTGCTTCTCAGATGTTCCTCGGTGACACTTGTGCAGTGGTGTTTCTTGGCGTGCTTACTTTGCTTGTCTTTGGGTCTTGACAATCAAACTCCATCCTGTGACCCGCATGATTTTTCAGCCCTGAAGGAGTTTGCAGGCAACCTTACAAATGGCTCTATCATCACAGCATGGTCCAATGATATTGTCTGCTGCAACTGGATTGGAGTTATCTGTGATAATGTGACTGGGGCTAATGGAGCAGCTGCTAGTAGAGTGACCAAATTGATCCTCCCTGGAATGAGTCTCAATGGGACAATTTCACCCTCTTTAGCACAGCTGGATCAGCTCAAAGTGCTGAATCTTTCATTTAATCATCTTGGAGGTGGATTGCCTGTAGAGTTCTCCAAATTGAAGCAGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCAGGACCTGTTACTGAGTCACTTTCTGGTTTGCAGTCCATTGAAGTATTGAATATTTCTAGTAATTCATTTGATGGAGACCTCTTCCAGCTTGGGGAATTCCCACATCTCCTTGCCCTCAACATGAGTAACAATTCATTCACTGGCAGATTCATTTCTCAAATTTGCAGTTCTTCCAAGGATCTTCATACCCTTGATTTATCTGCAAATCATTTTGGTGGTGGTCTTGAAGGCTTGGACAACTGCACCACATCTCTCCAACAGTTGCATTTGGATTCCAATTCATTTTCTGGCACCCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGCAATTCTCAGTCTCTGCCAACAATTTATCTGGCCAGTTAAGCAACCAACTAAGTAAGCTCTCTAGCCTAAAATCTCTGGTGGTTTCTGGCAACCGTTTTTCAGGGGAACTTCCAAATGTGTTTGGGAACCTTTCACACCTAGAACAGTTAGTAGCACATGCTAATTCATTTTCTGGACCATTGCCTTCCACTTTGGCTTTATGCTCTAAGCTTAGGGTGCTTGATTTTCGAAATAATTCCTTGTCAGGTCCTATTGATCTTGATTTCAGAGGGTTGTCTAATCTTTGCTCACTTGATCTTGCTAGTAATCATTTTATTGGACCCCTTCCTAGTTCTTTGTCCTATTGCCAGGAATTGAAAGTTTTAAGCCTTGCTAGGAATAGTTTAAATGGCACTATCCCTGAGAACTATGCCAACCTCACTTCACTTTTGTTTGTATCCTTGTCAAACAACAGCTTAGAGAACTTATCTGGGGCACTGTCTGTTCTACAGCAGTGCAAAAATCTCACCACTCTTGTCCTCACTAAGAATTTCCATGGTGAGGAAATTCCAGAAAGTGTACCAGCAGGATTTGAGAGTCTTATGGTTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCATGTTCCTTCTTGGCTATCAGAATGCAGGAAATTGGCAGTGCTTGATTTGTCTTGGAACCATTTGAATGGTAGTATTCCTTCTTGGATTGGTCACATGGACAGTTTGTTCTACTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAAAAAGTTTGACAGAGTTGAGGGGCCTCATGTGCTCAAATTGTAATAGAGCGAATCTCGCAGCTATTGCAGCCAATCCTCTCTTTGTTAAGAGGAACACGAGTGCTAGTGGGCTGCAATATAACCAGGCCTCAAGTTTCCCTCCATCCATTTACTTGAGCAATAACATGTTAAGTGGAAATATATGGCCTGAAATTGGTCGATTGAAAGCACTGCATGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAACACTATTTCAGAGATGGAGAACTTGGAAACATTAGATTTATCTTATAATGATCTCTCTGGTGAAATCCCTCCATCATTTAACAACCTCACGTTCTTGGCAAAGTTCAGTGTGGCACATAATCACTTAGAAGGACCAATTCCAACAGGGGGGCAGTTTCTAAGCTTCCCTAGTTCAAGCTTTGAAGGCAATCTGGGGCTTTGTAGGGACATTGATTCTCCTTGCAAAATCATCAACAATATGAGGCCCAATATTTCTTCAGATTCATCCAGAAAATTTAGTCGAAGCAATGTCCTTGGCATAACAATTGGTATAGGGATAGGACTTGCACTGCTTCTTGCAATTATTCTGCTAAGAATGTCAAAGAGGGATGAGGATAAGCCTATTGATAACTATGATGAGGAACTCAATAGTAGGCCACACAGGTTATCTGAAGCACTTGTTTCCTCAAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAAGCAAACATTGTTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACCAAAGCAGCTGTCAAGAGACTTTCTGGGGACTGTGGTCAAATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTAGACATGGGAATGACAGATTGCTAATTTACTCATACTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGAATCTGGTGTCATGGGTTTTTCAGATGAAATCTGAAAACAAGGAGCAGGAAATTTTTGATCCAGTCATTTGGCAGAAGGATCGTGAGAAACAACTATTGGAAGTTCTTGCCATTGCTTGTAAATGTCTTGACCAAGATCCAAGGCAGAGACCCTCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGCTGTCAACAGTGA 2793 0.4153 MVLLRCSSVTLVQWCFLACLLCLSLGLDNQTPSCDPHDFSALKEFAGNLTNGSIITAWSNDIVCCNWIGVICDNVTGANGAAASRVTKLILPGMSLNGTISPSLAQLDQLKVLNLSFNHLGGGLPVEFSKLKQLKFLDVSHNMLSGPVTESLSGLQSIEVLNISSNSFDGDLFQLGEFPHLLALNMSNNSFTGRFISQICSSSKDLHTLDLSANHFGGGLEGLDNCTTSLQQLHLDSNSFSGTLPDSLYSMSALEQFSVSANNLSGQLSNQLSKLSSLKSLVVSGNRFSGELPNVFGNLSHLEQLVAHANSFSGPLPSTLALCSKLRVLDFRNNSLSGPIDLDFRGLSNLCSLDLASNHFIGPLPSSLSYCQELKVLSLARNSLNGTIPENYANLTSLLFVSLSNNSLENLSGALSVLQQCKNLTTLVLTKNFHGEEIPESVPAGFESLMVLALGNCGLKGHVPSWLSECRKLAVLDLSWNHLNGSIPSWIGHMDSLFYLDFSNNSLTGEIPKSLTELRGLMCSNCNRANLAAIAANPLFVKRNTSASGLQYNQASSFPPSIYLSNNMLSGNIWPEIGRLKALHVLDLSRNNITGTIPNTISEMENLETLDLSYNDLSGEIPPSFNNLTFLAKFSVAHNHLEGPIPTGGQFLSFPSSSFEGNLGLCRDIDSPCKIINNMRPNISSDSSRKFSRSNVLGITIGIGIGLALLLAIILLRMSKRDEDKPIDNYDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIVGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHENLVSWVFQMKSENKEQEIFDPVIWQKDREKQLLEVLAIACKCLDQDPRQRPSIEVVVSWLDSVRFDGCQQ 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi279g00024 930 ProSiteProfiles Protein kinase domain profile. 773 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi279g00024 930 SUPERFAMILY Protein kinase-like (PK-like) 859 924 IPR011009 -
Sebi279g00024 930 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515
Sebi279g00024 930 FunFam Phytosulfokine receptor 1 736 848 - -
Sebi279g00024 930 SMART LRR_typ_2 580 603 IPR003591 -
Sebi279g00024 930 SMART LRR_typ_2 107 130 IPR003591 -
Sebi279g00024 930 SMART LRR_typ_2 347 371 IPR003591 -
Sebi279g00024 930 SMART LRR_typ_2 494 518 IPR003591 -
Sebi279g00024 930 SMART LRR_typ_2 604 627 IPR003591 -
Sebi279g00024 930 SMART LRR_typ_2 275 298 IPR003591 -
Sebi279g00024 930 SMART LRR_typ_2 395 418 IPR003591 -
Sebi279g00024 930 SMART LRR_typ_2 131 154 IPR003591 -
Sebi279g00024 930 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Sebi279g00024 930 Gene3D Ribonuclease Inhibitor 33 261 IPR032675 -
Sebi279g00024 930 SMART LRR_sd22_2 580 609 - -
Sebi279g00024 930 SMART LRR_sd22_2 131 157 - -
Sebi279g00024 930 SMART LRR_sd22_2 323 344 - -
Sebi279g00024 930 SMART LRR_sd22_2 395 413 - -
Sebi279g00024 930 FunFam Leucine-rich repeat receptor-like kinase 37 157 - -
Sebi279g00024 930 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Sebi279g00024 930 Gene3D Ribonuclease Inhibitor 371 679 IPR032675 -
Sebi279g00024 930 SUPERFAMILY L domain-like 549 685 - -
Sebi279g00024 930 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 309 883 - -
Sebi279g00024 930 Gene3D Phosphorylase Kinase; domain 1 736 848 - -
Sebi279g00024 930 Gene3D Transferase(Phosphotransferase) domain 1 850 927 - -
Sebi279g00024 930 SUPERFAMILY RNI-like 227 527 - -
Sebi279g00024 930 FunFam Tyrosine-sulfated glycopeptide receptor 1 344 678 - -
Sebi279g00024 930 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 245 340 - -
Sebi279g00024 930 PRINTS Leucine-rich repeat signature 583 596 - -
Sebi279g00024 930 PRINTS Leucine-rich repeat signature 604 617 - -
Sebi279g00024 930 ProSitePatterns Protein kinases ATP-binding region signature. 779 801 IPR017441 GO:0005524
Sebi279g00024 930 Gene3D Ribonuclease Inhibitor 262 367 IPR032675 -
Sebi279g00024 930 Pfam Protein tyrosine and serine/threonine kinase 776 868 IPR001245 GO:0004672|GO:0006468
Sebi279g00024 930 SUPERFAMILY Protein kinase-like (PK-like) 755 867 IPR011009 -
Sebi279g00024 930 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515
Sebi279g00024 930 SUPERFAMILY L domain-like 58 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi279g00024 Sebi-Chr279 635562 638726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi279g00024 16 713 Miscellaneous Gene Families AT1G17240 39.944 1.16e-155 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Sebi279g00024 PK_Tyr_Ser-Thr 3.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi279g00024 - - gmx:100797812 1395.18