Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00071 GATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGCGAGCTGCTCATGGGAATATACGAGAAGGGTTTTGAAAAACCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCGTTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATCATGTTATTCAAGTTGTTATCCTGGTCCCAACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACAAGCCTGAAAGATGATATAATGCGTTTGTATCAACCAGTTCACTTACTAGTAGGAACACCAGGAAGAATATTAGATCTTGCCAAGAAGGGTGTTTGTATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCATTTTCTTCCTGCAAACCGTCAAATCCTGATGTTTTCGGCGACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGGTATCTTCATAAACCATATGTTATTAACCTTATGGACGAGCTTACTCTGAAGGGTATTACACAATATTATGCTTTCGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTTTTTTCTAAG 726 0.3871 DVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNHVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIQQLIHFLPANRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00071 242 Gene3D - 2 212 IPR027417 -
Sebi278g00071 242 Pfam DEAD/DEAH box helicase 33 197 IPR011545 GO:0003676|GO:0005524
Sebi278g00071 242 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 242 - -
Sebi278g00071 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 210 IPR027417 -
Sebi278g00071 242 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 8 36 IPR014014 GO:0003724
Sebi278g00071 242 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 155 163 IPR000629 -
Sebi278g00071 242 FunFam ATP-dependent RNA helicase DDX6 1 212 - -
Sebi278g00071 242 SMART ultradead3 27 223 IPR014001 -
Sebi278g00071 242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 209 IPR014001 -
Sebi278g00071 242 CDD DEADc_DDX6 10 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00071 Sebi-Chr278 1238601 1240449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi278g00071 10 240 Eukaryotic Initiation Factors Gene Family AT3G19760 37.339 2.99e-51 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00071 K12614 - aew:130783804 474.937