Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00055 ATGCGACTAAGGGTCGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTACCATGACCTTAATGCATATAGAGTTCTATTTGATGAGGATGGTAATCCTAGGCTTTCGAGCTTTGGCCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCGGAAAGCGTAATATATAGCTTTGGTACTCTTTTGCTTGACCTTCTCAGTGGGAAGCATATTCCCCCAAGTCATGCCCTCGATTTGATTCGGGACAGAAATCTTCAGATGCTGACAGATTCTTGTTTGGAAGGACAGTTTTCTGATGATGATGGAACTGAGCTGGTACGCTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAACGGCCTAATCCAAAATCATTGGTGGCTGCTTTGGCTCCTCTTCAGAAGGAAACAGAGGTTCCTTCACATGTCTTGATGGGTATCCAACATATTGCTACTTTTACTTCATTGTCTCCACTTGGTGAAGCATGCTCAAGAAGGGACTTGACTGCCATACATGAATTGTCATTCCAGATGTGGACTGATCAAATGCAGGAGACGTTGAATTGTAAGAAAAAGGGAGATGTTGCTTTCCGGCAGAAAGATTTTAGACTAGCAATTGAGTGCTACACACAGTTCATTGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTGTGTTATCTCATTAGTGACATGCCTCAAGAAGCACTGA 798 0.4361 MRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHVLMGIQHIATFTSLSPLGEACSRRDLTAIHELSFQMWTDQMQETLNCKKKGDVAFRQKDFRLAIECYTQFIDAGTMVSPTVYARRSCVISLVTCLKKH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00055 265 Gene3D Transferase(Phosphotransferase) domain 1 1 173 - -
Sebi278g00055 265 SUPERFAMILY Protein kinase-like (PK-like) 2 167 IPR011009 -
Sebi278g00055 265 Pfam Protein kinase domain 5 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi278g00055 265 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi278g00055 265 FunFam probable serine/threonine-protein kinase At5g41260 1 172 - -
Sebi278g00055 265 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 254 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00055 Sebi-Chr278 975346 977777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi278g00055 2 158 Receptor kinase-like Gene Family AT3G58690 31.073 1.73e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi278g00055 Pkinase 3.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00055 K14500 - gmx:100781311 481.1