Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00038 ATGGCAGTGGCGAGTCGTACTCCTATGGTTGCAACTCCACATGGGGTCAGTTGTGTGAACTCTCCTCATGATATTGGGCTTCATAGAATAAGAATGATGACCACTAGTAGGAGGGAAAGTGTACAAGATCAGCCAAATTATATTAATCCAGATGTGATTATTAATGACACAATATATGTTGCTGTGGCAAAAGATGTGAAAGATAGCAAATTAAATCTGATATGGGCAATTCAGAACTCTCGAGGAAACAGAATATGCATCCTTCATGTTCACGTGCCAGCTGCCATGATTCCTTTGATGGGTGCTAAATTTCCAGCAAGTGCACTGAAAGAGCAGGAAGTTGGAGCATACAGGGAAATTGAAAGGCAAGACATGCATAAGACTCTGGATGCCTATCTTCTTATCTGTCAAAAGATGGGGGTGAGGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTGTAGAACTCATCTCCCATCATAACATACAAAAGCTTGTAATGGGAGCAGCTTCTGATAAGTACCATTCTAGGAGAATGACGGATCTCAGATCTAAGAAAGCCATCTATGTATGTGAACAAGCTCCAGCTTCTTGTCACATACAGTTTATCTGCAAAGGCTACCTCATACACACAAGGGATGGCAATTTGGATAGAAGTAATGTAGAGGGCAAATCTCCTTTGGTGCAGCAAATGCCAAACTCTGAAGTTGGGCATTCCCCTAACTTGAGATCTCAATCTGTGTCATGGGGGCAAAATCAATGGGTGAAACTAGCTAGTCCAGCTCAAGAGCTATTTCGTAGAGCAAGGTCTACCAATGATGGAAATGGAAGGAGCATTGCCTCTGTTTCTTCTTCAGAAGGATCTTCAACTACTACACCACAGAGCAAGTTGGGTTCTGATGAGTCAGATAGGGTGTCAAGATGGACTAATTCACCTTCAGTTTTGTCAATGTGCTCTGATAGTGAATCACCAAATTTGATTAGTGATGGCAGTGAGAATGCATTAGACTTGATCAGTTTGAGTGGCCTTTCTATTATTAAGGAGGAATATTCTCATCATTCATCACCTCCTAGTGTCCTGGATGGAGGAATGGATGATAGTGTGTATGATCAACTTGAACAAGCAATGGCTGAGGCTGAGAATGCAAGAAGGGATGCATTTCAAGAAACTCTTAGGCGTGGCAAAGCTGAAAAAGATGCCATTGATGCTATACGCAGGACTAAAGCCGCTGAAATCTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAGTTAGAGGAAGCACTAGTGAAAGCAAAAGAAGAAATTGATAATATGAAGAGCCAAAGAGACAAAGTTAATGAGGAACTCCAACTTGCACTACATCACAAATCATCACTAGAGAATCAAATTGCATCAACTGAACTTTCTATTAAGGAGTTGGAGCAGAAGATTATATCTGCTGTTGATCTATTACAAAGCTCCAAGAATGAACAAGATGACATCCAAATGCAGCGTGATAATGCATTGAAAGAGGCTGAGGAGTTAAGGAGAAAATCACAAGGAGAGTCCTCAAGCACACATGTAGTGCTTCAACTCTTCTCAGAATTCTCTTGTTTAGAGATTAAAGAAGCAACAAGTAACTTCAATCCTTCCCTTAAGATTGGTGAAGGTGGATATGGAAGTATATTTAAAGGTACCCTGCGTCACACTGAGGTGGCTATAAAAATGTTGAACCCCAACAGCACACAAGGACCCTCTGAGTTTCAACAGGAGGTTGAGGTATTGAGCAAGTTAAGGCATCCTAATCTTATCACACTTATAGGAGCCTGCCCAGAATCATGGACTCTTGTGTATGAATATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACACACCTCCCTTGTCATGGCAAACTCGGATTCACATTGCTGCAGAACTATGTTCTGCTCTCATTTTTCTCCATTCAAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCTAACATTCTCCTTGATGCAAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCTCTAGGATACTATCATGTGAAGAGGATTCAAGTAACAACATTTCACAGTTTTGGATGACTGTTCCAAAGGGAACATTTGTCTACATGGATCCTGAATTCCTTACTTCAGGTGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTATTAAGATTGATAACTGGGAGACCAGCTTTGGGAATAATGAAGGAAGTGCAATATGCATTACAAGGTGGAAAGCTGAAATCTGTGTTGGATCCTTTGGCTGGAGAATGGCCATTTGTGCAAGCTGAACAATTGGCTTGTTTGGCTTTGAGGTGTTGTGATATGAATAGGAAGAGCAGGCCAGACCTTCATTCAGATGTCTGGAAGATTCTGGAACCAATGAGGGCTTCTTGTGGAGGCACAAACATCTTTGGACTTGGTTCTCAATAA 2487 0.4105 MAVASRTPMVATPHGVSCVNSPHDIGLHRIRMMTTSRRESVQDQPNYINPDVIINDTIYVAVAKDVKDSKLNLIWAIQNSRGNRICILHVHVPAAMIPLMGAKFPASALKEQEVGAYREIERQDMHKTLDAYLLICQKMGVRAEKLHIEMDCIEKGIVELISHHNIQKLVMGAASDKYHSRRMTDLRSKKAIYVCEQAPASCHIQFICKGYLIHTRDGNLDRSNVEGKSPLVQQMPNSEVGHSPNLRSQSVSWGQNQWVKLASPAQELFRRARSTNDGNGRSIASVSSSEGSSTTTPQSKLGSDESDRVSRWTNSPSVLSMCSDSESPNLISDGSENALDLISLSGLSIIKEEYSHHSSPPSVLDGGMDDSVYDQLEQAMAEAENARRDAFQETLRRGKAEKDAIDAIRRTKAAEILYKEELKLRKELEEALVKAKEEIDNMKSQRDKVNEELQLALHHKSSLENQIASTELSIKELEQKIISAVDLLQSSKNEQDDIQMQRDNALKEAEELRRKSQGESSSTHVVLQLFSEFSCLEIKEATSNFNPSLKIGEGGYGSIFKGTLRHTEVAIKMLNPNSTQGPSEFQQEVEVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIHIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGISRILSCEEDSSNNISQFWMTVPKGTFVYMDPEFLTSGELTPKSDVYSFGIILLRLITGRPALGIMKEVQYALQGGKLKSVLDPLAGEWPFVQAEQLACLALRCCDMNRKSRPDLHSDVWKILEPMRASCGGTNIFGLGSQ 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00038 828 Gene3D Transferase(Phosphotransferase) domain 1 618 818 - -
Sebi278g00038 828 Gene3D Phosphorylase Kinase; domain 1 515 617 - -
Sebi278g00038 828 ProSiteProfiles Protein kinase domain profile. 545 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi278g00038 828 SUPERFAMILY Protein kinase-like (PK-like) 520 803 IPR011009 -
Sebi278g00038 828 Pfam Protein kinase domain 549 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi278g00038 828 SMART serkin_6 545 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi278g00038 828 CDD STK_N 57 210 - -
Sebi278g00038 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Sebi278g00038 828 Coils Coil 373 393 - -
Sebi278g00038 828 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 69 176 - -
Sebi278g00038 828 MobiDBLite consensus disorder prediction 272 331 - -
Sebi278g00038 828 Coils Coil 418 515 - -
Sebi278g00038 828 ProSitePatterns Protein kinases ATP-binding region signature. 551 572 IPR017441 GO:0005524
Sebi278g00038 828 FunFam receptor-like protein kinase FERONIA 507 617 - -
Sebi278g00038 828 PANTHER OS02G0152300 PROTEIN 58 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00038 Sebi-Chr278 725350 731732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi278g00038 53 826 U-box Gene Family AT2G45910 52.842 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sebi278g00038 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00038 - - gmx:100780079 1101.27