Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00037 ATGCAAGATCCACATGTGGCTGCAGATGGTTTCACCTATGAAGCTGAGGCTATAAGGGGATGGCTGGAAAGTGGTCATGACACTTCACCAAGGACAAATTCTAAGCTTGCACATCTCAATCTTGTTCCCAACCATACTCTTCGCTATGCAATTCAGGACTGGCTTCAAAGTCACTGA 177 0.4576 MQDPHVAADGFTYEAEAIRGWLESGHDTSPRTNSKLAHLNLVPNHTLRYAIQDWLQSH 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00037 58 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Sebi278g00037 58 PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 1 57 - -
Sebi278g00037 58 ProSiteProfiles U-box domain profile. 1 58 IPR003613 GO:0004842|GO:0016567
Sebi278g00037 58 CDD RING-Ubox_WDSUB1-like 1 44 - -
Sebi278g00037 58 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 58 IPR013083 -
Sebi278g00037 58 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Sebi278g00037 58 SUPERFAMILY RING/U-box 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00037 Sebi-Chr278 724831 725007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi278g00037 1 58 U-box Gene Family AT2G45910 75.862 1.02e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00037 - - gmx:100781596 115.931