Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00031 ATGGTCATAAGGCAACCATCACTGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCTTACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGCGAGCTTTATAATTGGTTACCATCTGTGGCATGCATTTTTTATGTTGAGGGAAGGATCATCGGTCAAAATTATTTTCTCAAGTACCGTTGTCAAAGACGCCTGCTTTTGACAGGAACGCCGTTACAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAAGAAAGCCTTTAATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCTACTCAAAATGCAGAGGATGATTGGCTTGAGACGGAGAAGAAAGTTATCATAATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGGGTTGAAGATGTTGAAGGCTCGCTACCACCAAAGGTCTCCATAGTTTTAAGATGTAAAATGTCACCTGTCCAGAGTGCCATTTATGACTGGGTCAAAGCAACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGTAGGGTTCAAAAGAATCCATCATACCAGGATACTCAAAAACTTCAAAGAACTGGACATCGGGTTCTCCTGTTCAGTACCATGACAAAACTTCTAGACATCTTGGAAGAGTACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATAGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTTAATAGCCCTGATTCAGACTGTTTCATCTTCTTGCTCAGTATTCGAGCAGCTGGAAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAAGCTGTTGCCAGAGCTCATCGCATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCAGTTGTTGACAAAATCTCTAGTCATCAGAAGGAAGATGAACGGAGAAGTGGAGGCACTGTTGACATGGAGGATGAACTTGCAGATATGGCTGATGAAGTCATCAATGCTGGACGATTCGATCAAAGAACAACACATGAAGAAAGGCGTTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCACTGCAGGAGGTAAATCGCATGATTGCCAGGAGTAAAGAGGAAGTTGAACTGTTTGATCAAATGGACGATGAACTGGATTGGATTGAGGAGATGACACGCTATGATCATGTGCCTAAGTGGCTTCGTGCTAATACAAGAGAAGTAAATGCTGCTATTGCTGCTTTATCAAAAAGACCATCAAAGAACACTTTATTGGGTGGTAGTATTGGCATGGAATCAAGTGAAGTTGGTTCTGAAAGAAGAAGAGGACGACCCAAGGGAAAGAAGCATCTTAGTTATAAAGAGTTGGATGATGAAAATTTGGAATACTCTGAAGCAAGCTCTGAGGATAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTATAGTGGGGCTGATGGAACTCAGCCCATTGATAGAGATCAAATGGAAGATGGTCTGCTTTGTGATGGCGGATATGAATTTCAACGATCTTTAGAAAATCCTAGAAATAATCAGGTGGTTGAAGAAGCTGGAACCTCTGGGTCATCCTCAGACAGTCAAAGATTGACAGATAGTATCACCATCAATTTCCTTCAGAAATTTGGTTCCCTCTCTGCATTGGATGCCCGGCCAAGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGAAATTGCAGTATCTGTTGATTCTCATATGGACCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGAGGAACAAGTTTTACAGAAACCAAAGATTAAACGCAAACGTAGTCTTCGTGAATGATCAGAACACATCATCATCAAAACATAAGCGAACTTTACCTTCAAGGAGAGTTGCTAATACATCCAAATTACATGGCTCACCAAAGTCTACTCGTTTGAATTGCATATCTGCTCCTTCAGAGGATGGTGGTGAACATTCCAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCTTCTGGTCACGGCACTAAGATGACTGAAATCATTCAGAGAAGGTGCAAAAATGTAATCAGCAAGCTCCAAAGAAGAATAGACAAGGAAGGCCATCAAATTGTCCCTTTGTTAACGGATTTGTGGAAGAGGATTGAGAATTCTGGGTACAATGGTGGATCTGGGAACAACCTGTTGGATTTACGGAAGATTGATCAGAGGATTGATAGATTGGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGTTGAAGAGCGCGATGCATTTTATGGTTTTTCACATGAGCCTAAAGTTCATGGTTGCTGTTGATGTAGATAATGTGATTAAGATGTTCATATGA 2631 0.412 MVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVACIFYVEGRIIGQNYFLKYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSPVQSAIYDWVKATGTLRLDPEDEKRRVQKNPSYQDTQKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDERRSGGTVDMEDELADMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEVELFDQMDDELDWIEEMTRYDHVPKWLRANTREVNAAIAALSKRPSKNTLLGGSIGMESSEVGSERRRGRPKGKKHLSYKELDDENLEYSEASSEDRNGYAHEEGEIGEFEDDGYSGADGTQPIDRDQMEDGLLCDGGYEFQRSLENPRNNQVVEEAGTSGSSSDSQRLTDSITINFLQKFGSLSALDARPSSISKRMTDELEEGKLQYLLILIWTINSLEVGFMIVMKVRRNKFYRNQRLNANVVFVNDQNTSSSKHKRTLPSRRVANTSKLHGSPKSTRLNCISAPSEDGGEHSRESWEGKPINSSGSSGHGTKMTEIIQRRCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGYNGGSGNNLLDLRKIDQRIDRLEYNGATELVFDVQFMLKSAMHFMVFHMSLKFMVAVDVDNVIKMFI 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00031 876 Gene3D - 1 102 IPR038718 -
Sebi278g00031 876 MobiDBLite consensus disorder prediction 753 767 - -
Sebi278g00031 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 417 IPR001650 -
Sebi278g00031 876 SMART helicmild6 270 354 IPR001650 -
Sebi278g00031 876 MobiDBLite consensus disorder prediction 498 582 - -
Sebi278g00031 876 Pfam SNF2-related domain 17 90 IPR000330 GO:0005524|GO:0140658
Sebi278g00031 876 MobiDBLite consensus disorder prediction 703 767 - -
Sebi278g00031 876 CDD SF2_C_SNF 250 364 - -
Sebi278g00031 876 MobiDBLite consensus disorder prediction 596 618 - -
Sebi278g00031 876 Pfam SNF2-related domain 105 239 IPR000330 GO:0005524|GO:0140658
Sebi278g00031 876 MobiDBLite consensus disorder prediction 717 737 - -
Sebi278g00031 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 462 IPR027417 -
Sebi278g00031 876 MobiDBLite consensus disorder prediction 527 556 - -
Sebi278g00031 876 PANTHER SNF2/RAD54 HELICASE FAMILY 250 563 - -
Sebi278g00031 876 Gene3D - 197 463 IPR027417 -
Sebi278g00031 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 138 IPR014001 -
Sebi278g00031 876 SMART ultradead3 10 146 IPR014001 -
Sebi278g00031 876 Gene3D - 103 190 IPR038718 -
Sebi278g00031 876 Pfam Helicase conserved C-terminal domain 251 354 IPR001650 -
Sebi278g00031 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 191 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00031 Sebi-Chr278 634619 641140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi278g00031 247 389 RAD5 or RAD16-like Gene Family AT5G22750 36.735 1.73e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi278g00031 SNF2_N 2.4e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00031 K11647 - gmx:100793092 1310.82