Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00030 ATGGCAGGGTGGTCGCTGCTCGACGTAGGAGTTAGCAGTGTCGTTGTTGGAGTGCAATACGACGAGGTTCGGTGCCGTTTTGAGGTGTTTCTTGCTGAGTTCTTGAGGGAGATCTGTCCCACGAGTCGGAGTTGCTTCCGTCCTTTTCCTCCAATGCTGGGTGATGGGCAGCGCGTGGATTTGTTCAAGCTGTTTACGGTGGTGAAGGGGAAAGGAGGGTACGACGCCGTTTGCAATGGAAAGTTGTGGGATTTGGTTGGGGAGGAATCTGGGTTGGGTGTGAGTGTCGGTTCGTCTGTGAAACTGGTTTATAGTAAATACTTGAGTGTTTTAGATGCATGGGTGAAGAAAGTTGCTGATAGTAAGGTACCTTTTGAGTGTGGTTTGGTGGATGATAGGGTTAAGTTCGCTAGGCGTTTGATGGAGTTGCAGGCTGAGGTGAAAGGGTTGTTGTCTGATCGTGCTGCTGATGCTGTGGCTGAGAAGGAGTTAAAGGGTGAATCTGATGATGACTACCGGGGTGTGAGGAAGTTGTGTGGTACTAATGAGGTGAAAGGTTTGAATTTGGAGTCCAATGGAGACCAAAAAGTCCAGAATGGAGGATGTTCTGATTCGGATATGCCAGACCGTGAGATGATGAATGAATCTGTTCTAGGAAACTTGTGTGAGGGTAATGATGCAATGGGAGTAATGGAAGAGTTTGATGGAGGGAAAATTTCTGCGGAGGAGTCCGTGGTGGTGGATGTATCTGATGCAATGAACAGCAGCAGAAGCACAACTGGATTGTCGATTGAAGGCAAGAATGGTGGTGATGATAATACCGGTGTCTTGGTATTGGATTCTTCTGGTGGTGATGGAGGGAGTTCTGGTTATAAGAGGAAGAGAGAGTCTGTGTTTGATTTGCTGAGTTGGGTTACTCGCGTTGCGAAGAATCCTTGTGATCCTGCAGTTGGTTCCATGCCTGAAAAGTCCAAGTGGAAGTCTTACAGTAATCAAGAGCTCTGGAAGCAGGTTTTGCTGTTTCGTGAAGCTGTTTTTTTCAAAAAACATTTTGAGTCGAGCAGTGAACAGCATAATTGGCAGAGTCAGAAGATGCATCCTTGCATGTATGATGATCCCATTGTGACAACCTACAATCTTCGAGAGAGGTTGAAATGTGACAAGAAACTGTTATTTGGAAAATTGACATCAGCTGTACGGAGCTCTTCAGAATCATCTGTAGGAACGGAAGGAGATTCAGACAGAACACCAAGTCCTCATGCTGCAGATCGAGCTGTTGTACCACAGTGGACTGGCATGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACCCAAATATGGCCACCGCAAAATGTAACTTCTAGACTCCTTATTGAAAGGGATCCCATAGGAAAGGGAAGACAAGATGTATGTGGCTGCTCACAGCCAGGTTCTGTTGAGTGTGTCAGATTCCACATTGCTGAGAAAAGGGGTAAAGTTAAGTTGGAATTAGGTGTGGCTTATTACCAATGGAATTTTGATAAGATAGGTGAAGATGTCAGGCGTTTTTGGACAAATGAAGATGAGAAAAAATTCAAGGATGTGATACAATCAAACTCTTCCTCATCTGAGACATATTTCTGGGATCATATTTTTAGAACATTTCCTAAGAAGAGCCGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTCTTTTGCAACGGAGAGGGTACCAGAATAGGCATACTCCTGATGAAATTGACAGTGATGATGATGAATCAGAATCTGGTTTGAGGAATGTTTTTGGACATCAGACACAGAAATCACGTAGCTCCATCTTATTAACCCCCAAAAAGCCACAGACAAAGGGAAGAGATAGCAAGTGA 1866 0.4464 MAGWSLLDVGVSSVVVGVQYDEVRCRFEVFLAEFLREICPTSRSCFRPFPPMLGDGQRVDLFKLFTVVKGKGGYDAVCNGKLWDLVGEESGLGVSVGSSVKLVYSKYLSVLDAWVKKVADSKVPFECGLVDDRVKFARRLMELQAEVKGLLSDRAADAVAEKELKGESDDDYRGVRKLCGTNEVKGLNLESNGDQKVQNGGCSDSDMPDREMMNESVLGNLCEGNDAMGVMEEFDGGKISAEESVVVDVSDAMNSSRSTTGLSIEGKNGGDDNTGVLVLDSSGGDGGSSGYKRKRESVFDLLSWVTRVAKNPCDPAVGSMPEKSKWKSYSNQELWKQVLLFREAVFFKKHFESSSEQHNWQSQKMHPCMYDDPIVTTYNLRERLKCDKKLLFGKLTSAVRSSSESSVGTEGDSDRTPSPHAADRAVVPQWTGMTSESDSKWLGTQIWPPQNVTSRLLIERDPIGKGRQDVCGCSQPGSVECVRFHIAEKRGKVKLELGVAYYQWNFDKIGEDVRRFWTNEDEKKFKDVIQSNSSSSETYFWDHIFRTFPKKSRADLVSYYFNVFLLQRRGYQNRHTPDEIDSDDDESESGLRNVFGHQTQKSRSSILLTPKKPQTKGRDSK 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00030 621 SMART bright_3 22 117 IPR001606 GO:0003677
Sebi278g00030 621 ProSiteProfiles ARID domain profile. 21 116 IPR001606 GO:0003677
Sebi278g00030 621 MobiDBLite consensus disorder prediction 592 611 - -
Sebi278g00030 621 CDD ARID 26 108 - -
Sebi278g00030 621 SUPERFAMILY ARID-like 25 121 IPR036431 GO:0003677
Sebi278g00030 621 Gene3D - 17 124 IPR036431 GO:0003677
Sebi278g00030 621 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 22 613 - -
Sebi278g00030 621 SMART ARID_2 18 112 - -
Sebi278g00030 621 MobiDBLite consensus disorder prediction 402 421 - -
Sebi278g00030 621 MobiDBLite consensus disorder prediction 575 621 - -
Sebi278g00030 621 Pfam ARID/BRIGHT DNA binding domain 43 109 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00030 Sebi-Chr278 606727 610147 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi278g00030 ARID 4.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00030 - - gmx:100779445 681.404