Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00029 ATGATTGTGTTTACTTACCCGCCGACTTTAGAAGAGCGTGAGTCTTTAACCTCTAATGATGGTGCGGTTACTTCACTCACTGCGGGATTACTGGTAGGCTTGAACCTGGAAGCATCCACACCTGATACTTACCAGCCCCCTCCTACACCTCTGCCTTATGATACGGTCCTGGGAGGTCCAGCATCAACAGACTCTGAGTCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACTTTAATTACATGTGAAGATCTTGAAGAATCTGATTGTAAAGCTCAAGCTAAATCTGCACCTATATCTCCAAGGAAGGAAGAGTTGTCAAAATCAAATGAATCTCATGCATCAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACCTGTCTTGTATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTGACCAAGCACTGGACTAG 528 0.4261 MIVFTYPPTLEERESLTSNDGAVTSLTAGLLVGLNLEASTPDTYQPPPTPLPYDTVLGGPASTDSESGRETVSGSSFETLITCEDLEESDCKAQAKSAPISPRKEELSKSNESHASVTEEEDVCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQALD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00029 175 MobiDBLite consensus disorder prediction 89 115 - -
Sebi278g00029 175 Pfam Ring finger domain 123 164 IPR001841 -
Sebi278g00029 175 SUPERFAMILY RING/U-box 118 171 - -
Sebi278g00029 175 SMART ring_2 124 164 IPR001841 -
Sebi278g00029 175 ProSiteProfiles Zinc finger RING-type profile. 124 165 IPR001841 -
Sebi278g00029 175 CDD RING-H2_AIRP1-like 120 168 - -
Sebi278g00029 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 173 IPR013083 -
Sebi278g00029 175 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 22 171 - -
Sebi278g00029 175 FunFam Putative E3 ubiquitin-protein ligase RHB1A 100 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00029 Sebi-Chr278 578162 579129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi278g00029 2 175 C3H Transcription Factor Family AT4G00335 55.747 3.66e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00029 - - gmx:100792561 288.885