LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi278g00011	ATGAGCCGTTCACGGGATCCACAACCGCCTCGATCTTTCTTCCCTTTTGGAAATCCTTTTCGGAAGATATCACCTAAAGGCTCTCGCATGTCTCCACAACTTCTTGCAATATTACAAGCTTTTGAAGCAACATTGGCAGAGAGGCTGAGAAACGTTATTCCAAAAAGCAAGGATGAAACCTCAGCTTATCTTGAGCTGCCCGTTAGTAATTGGGATGACAAATGGATTGATGTGTACTTGGACATAAGTTCAAAGTTGCTAGATATTTGCAATATATTCAGTTCTGAGCTTTTACGTCTGAATCAGTGCAATCTTCTGCTTAAGTGTGCAATGCACAATTTAGACTCTGCCTCTTCAAAGCTGTTTGTTCGGGCATGTTCTTTGCTTGATGATTGGAGGCATCATATGAATTCTAGGAACCCCAGAATTGAGAAATGTAGCACCATTTTAGATAATCTTGTGGGATCACTTGATCTTCCAAAGGTTAAAATTCTGCCAAAGATACTGTTGGCAGAGTCGATTCTGAAGACTGTTGAGGAATTAGGCAAGGCTGCAGAGAAACTTTCTGAAGGAATGGATGTTCTTGCAAAGGGAGTGGATGGCTTTTTCCAAGGGGTTTTGACTAGTCGTGATACTCTGCTATCCTCTCTGAGGTCAAATTCTGTCCCTGCACTTTCTAATGTCTATGAAACTGGGCTTAGCAATGAGGTTTGTAATCATGATGCTGGCAAAGCACATAAGGATGATGTGTCTCAAAACTCCAATTTTGGCGGCTTTGAAGAATGTTCTTTTGCAGCTCTATGTGAATCATCAGGCAAAACTGTAACAAATTTTGACTATAATGGACAACATCAAGACATGATTACAATAGAGGAGAAGCAAGGCCCACAGCAGCGACGCGGAGAACTCCCAGAGTGTAGCGGAGGACGGAGGACCAAAACGTTTACGAACGGAGAGGGACAGAGCGCAGGAGTCCAGAGAAGGGAGAGCGAAAATGACGGTGATGATAGACGACGACACTGGACACACCGAACGGTGGAGAAAGTGACAGAGATGGACGGAGCACGATTGAATAATGTAGGAGGCCACGCGGTGGGGGACAGAGGCGACGATAGCCAACCTGAGAATAACATCAAAGGGGTACCAACTCATGGTGGACGCTACGTTCAGTACAATATCTATGGCAACCTCTTTGAGGTTTCTAACAAGTATGTTCCTCCAATTCGCCCTGTTGGCAGAGGCGCTTATGGTATTGTTTGTGCTGCTGTAAATGCTGAGACAGGTGAGGAGGTCGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTACGAGAAATTAAACTTCTTCGGCACATGGATCATGAAAATGTGATGTCCATTAAAGACATTATACGGCCTCCACAGAAGGAGAACTTCAATGATGTGTACATTGTTTCTGAGTTAATGGACACAGATCTGCATCAAATAATACGTTCCAATCAGCCATTAACAGATGATCATTGTCGGTATTTTCTGTATCAGCTGTTACGAGGGCTCAGATATGTACATTCAGCAAATGTTTTGCATCGTGATCTAAAGCCTAGCAATTTGCTACTGAATGCCAATTGTGACCTTAAGATTGGAGACTTTGGTCTGGCTAGAACTACATCTGAAACTGATTTTATGACTGAGTATGTGGTTACTCGATGGTACCGAGCTCCCGAATTGCTTCTTAATTGTTCAGAATATACAGCAGCCATTGATATATGGTCTGTTGGTTGCATACTTGGTGAGGTCATAACAAGAAAACCCCTCTTTCCGGGCAAAGATTATGTTCATCAGCTGAGACTGATCACAGAGTTGATAGGTTCACCTGATGATGCCAGCCTTGGATTTCTACGCAGCGAAAATGCTCGTAGATACGTAAGACAGCTTCCACAATATCCAAAGAGAGACTTTTCTGCTAGATTTCCCAGTATGTCTGCTGGTGCTATTGATTTGCTAGAGAAGATGCTTGTCTTTGATCCAAACAAGCGCATTACAGTTGATGAGGCATTGTGCCACCCATACATGGCACCTCTCCATGATATCAATGAAGAACCTGTATGCGGAAAACCTTTCAGTTTTGACTTTGAGCAACCGTCATTCACTGAAGAAGATATCAAGGAACTCATCTGGAGAGAATCTGTGAAGTTCAATCCTGACCCACCAATTTACTGA	2220	0.432	MSRSRDPQPPRSFFPFGNPFRKISPKGSRMSPQLLAILQAFEATLAERLRNVIPKSKDETSAYLELPVSNWDDKWIDVYLDISSKLLDICNIFSSELLRLNQCNLLLKCAMHNLDSASSKLFVRACSLLDDWRHHMNSRNPRIEKCSTILDNLVGSLDLPKVKILPKILLAESILKTVEELGKAAEKLSEGMDVLAKGVDGFFQGVLTSRDTLLSSLRSNSVPALSNVYETGLSNEVCNHDAGKAHKDDVSQNSNFGGFEECSFAALCESSGKTVTNFDYNGQHQDMITIEEKQGPQQRRGELPECSGGRRTKTFTNGEGQSAGVQRRESENDGDDRRRHWTHRTVEKVTEMDGARLNNVGGHAVGDRGDDSQPENNIKGVPTHGGRYVQYNIYGNLFEVSNKYVPPIRPVGRGAYGIVCAAVNAETGEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNDVYIVSELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLRYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEVITRKPLFPGKDYVHQLRLITELIGSPDDASLGFLRSENARRYVRQLPQYPKRDFSARFPSMSAGAIDLLEKMLVFDPNKRITVDEALCHPYMAPLHDINEEPVCGKPFSFDFEQPSFTEEDIKELIWRESVKFNPDPPIY	739

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi278g00011	739	ProSitePatterns	Protein kinases ATP-binding region signature.	411	435	IPR017441	GO:0005524
	Sebi278g00011	739	SMART	serkin_6	405	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi278g00011	739	FunFam	Mitogen-activated protein kinase	390	499	-	-
	Sebi278g00011	739	CDD	STKc_TEY_MAPK	398	734	-	-
	Sebi278g00011	739	ProSiteProfiles	Protein kinase domain profile.	405	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi278g00011	739	MobiDBLite	consensus disorder prediction	364	383	-	-
	Sebi278g00011	739	MobiDBLite	consensus disorder prediction	293	307	-	-
	Sebi278g00011	739	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	403	692	-	-
	Sebi278g00011	739	ProSitePatterns	MAP kinase signature.	440	543	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Sebi278g00011	739	Pfam	Protein kinase domain	409	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi278g00011	739	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	527	539	IPR008271	GO:0004672\|GO:0006468
	Sebi278g00011	739	SUPERFAMILY	Protein kinase-like (PK-like)	408	698	IPR011009	-
	Sebi278g00011	739	Gene3D	Phosphorylase Kinase; domain 1	388	728	-	-
	Sebi278g00011	739	MobiDBLite	consensus disorder prediction	291	338	-	-
	Sebi278g00011	739	MobiDBLite	consensus disorder prediction	310	325	-	-
	Sebi278g00011	739	FunFam	Mitogen-activated protein kinase	489	718	-	-
	Sebi278g00011	739	Gene3D	Transferase(Phosphotransferase) domain 1	489	718	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi278g00011	Sebi-Chr278	205618	219537	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi278g00011	366	734	MAP Kinase Gene Family	AT4G01370	85.908	0.0	686

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Sebi278g00011		Pkinase	1.5e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi278g00011	K20600		-	gmx:100779469	712.22