Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi278g00005 ATGGTGGACGGCGGCGAATTCGCCGACACCATTTGTTCGATCTGCTATGAAGGTCTCAAGCCCATTGTGGAAGATCTCCAATCCATCTCCATATGCGGCCATGTCTTCCATGAGCTCTGTCTGCAGCAATGGTTCGAGTACTGTTCGAGATCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAATTGCAGGGCCAACGACGCGTGCAGGCTTTATTTTCAGTCAGTTGGAGATGTGAGCGACACTATTCTCCCTCAGAAGCACGTTGATTCTGAGGAAGATGCTGGGGTTCTGCGCAGGGAAGTGAAAAGATTGGAGGTGAAAGTTTCGGGGCTTAGTTCGGTGATGGAACGCCAAGTAAAAGAGTTAGAAGAACTTAAAGATGAGCTTTGTGCTTGCAAGGAACAGGCAAAAATAGAAATAGCATTGAAGAATGAGGCCTTGAAACAAAAAGCATCCATACAATACCAGTTTAATATGAAATCAGAGGAGCTTGAGAAGTCAACTTCGGAGTGTTTTAGATTAAAGGATAAAAATATGGCTTTGGCTAAAGAAGTTGCTGCATTAAAATTGTGA 576 0.4479 MVDGGEFADTICSICYEGLKPIVEDLQSISICGHVFHELCLQQWFEYCSRSKKHTCPVCKQNCRANDACRLYFQSVGDVSDTILPQKHVDSEEDAGVLRREVKRLEVKVSGLSSVMERQVKELEELKDELCACKEQAKIEIALKNEALKQKASIQYQFNMKSEELEKSTSECFRLKDKNMALAKEVAALKL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi278g00005 191 Coils Coil 109 140 - -
Sebi278g00005 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 72 IPR013083 -
Sebi278g00005 191 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 191 - -
Sebi278g00005 191 Pfam Ring finger domain 11 60 IPR001841 -
Sebi278g00005 191 SUPERFAMILY RING/U-box 9 65 - -
Sebi278g00005 191 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Sebi278g00005 191 SMART ring_2 12 59 IPR001841 -
Sebi278g00005 191 CDD RING-H2 12 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi278g00005 Sebi-Chr278 67231 68691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi278g00005 1 191 C3H Transcription Factor Family AT4G01270 52.356 4.13e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi278g00005 K11985 - gmx:100812811 300.827