Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi277g00048 ATGGCGACAAGGTACTGGGTTGTCTCTCTTCCCGTTCAAAATTCCGCATCCACTCTCTGGAACCGATTGCAGGAACAAATCTCCAAGCATTCCTTCGATACTCCTCTTTACAGATTCAACATTCCCAATCTCCGCGTTGGAACGCTAGACTCTCTCCTCTCTCTAAGCGATGATCTTGTCAAGTCGAACAGTTTCATGGAAGGAGTGTCGCACAAGATCAGGCGCCAGATTGAGGAATTGGAGAGGGTCTCAGGCGTGATGAGCAGCGGGTTGACGGTGGATGGGGTGCCTGTTGATTCTTACTTGACGAGGTTTGTTTGGGATGAAGCGAAGTACCCAACTATGTCGCCGTTGAAGGAGATCGTGGATGGGATTCATGGTCAGGTTGCAAAGATTGAGGATGATCTCAAGGGATGCTACATGTTTAACCTCTGA 435 0.4897 MATRYWVVSLPVQNSASTLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFMEGVSHKIRRQIEELERVSGVMSSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKGCYMFNL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi277g00048 144 SUPERFAMILY Vacuolar ATP synthase subunit C 1 137 IPR036132 GO:0015078|GO:0033180|GO:1902600
Sebi277g00048 144 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 137 IPR004907 GO:0033180|GO:0046961|GO:1902600
Sebi277g00048 144 Pfam V-ATPase subunit C 5 137 IPR004907 GO:0033180|GO:0046961|GO:1902600
Sebi277g00048 144 Gene3D - 41 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi277g00048 Sebi-Chr277 1178338 1180272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi277g00048 1 137 Primary Pumps ATPases(2) AT1G12840 86.131 8.78e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi277g00048 K02148 - gmx:100803728 260.766