Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00084 ATGACTCTCAAAGGCTTAGTATCACTTGTCTTCAATTTAATTGGTCTAACACAGAGACCAAGGAGCAAGGATGCCCCTTTACCTTACCTGCTATCAGATCCTATTGTCACACAGAAGATCAAGCAGCAACAATCATCTGAATCCAATTTTATGGAGAATAGTGAGGGTGGTTGGTGTTGTGTGTGCTTGTCAAGATTAAAGGACGAAGATGAAATCCGAGTCCTTCCTTGCTTGCATAAGTTTCATAAGATTTGTGTAAATAGATGGCTAAAGAGTCATCACAAAACATGTCCTCTCTGCCGTTTGTCAATGGGAGCTGAAGAGAAGTCTCATCGTTCAGAAATGTTCACTGAAGAGATGTTAATATGGTTTTCTTCTTTCCATATAGCTGGTATGTAA 399 0.396 MTLKGLVSLVFNLIGLTQRPRSKDAPLPYLLSDPIVTQKIKQQQSSESNFMENSEGGWCCVCLSRLKDEDEIRVLPCLHKFHKICVNRWLKSHHKTCPLCRLSMGAEEKSHRSEMFTEEMLIWFSSFHIAGM 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00084 132 Pfam Ring finger domain 59 101 IPR001841 -
Sebi273g00084 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 106 IPR013083 -
Sebi273g00084 132 CDD RING-H2_PA-TM-RING 59 101 - -
Sebi273g00084 132 PANTHER TARGET OF ERK KINASE MPK-1 38 109 - -
Sebi273g00084 132 SMART ring_2 59 100 IPR001841 -
Sebi273g00084 132 SUPERFAMILY RING/U-box 58 105 - -
Sebi273g00084 132 ProSiteProfiles Zinc finger RING-type profile. 59 101 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00084 Sebi-Chr273 1113363 1113761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00084 39 105 C3H Transcription Factor Family AT1G80400 35.714 1.13e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi273g00084 - - gmx:100809233 198.364