Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00078 ATGGAATTTGTGCCAAATCCAAGCCCTTTGCGTTCTACTTTGTTCGGTTCCTTTGGGGATCTCGTTGAGAGGGTTAAACGAATTGGCACCCTCGCTGTTTCTGCTATCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTCGCGTTAGTGGGTACTTTGTTAGGGGCTATGACTGGAGCTTTGATAGGCCAAGAAACTGAGAGTGGCTTCATTCGAGGAGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCTATTGAAGTGTTTGAATCATCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTCTTATACTTGATTGATGTTATTGCTAGCTTACTTAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAATCCAGCTTTGATGAGGTGCAAAACATCTTTGACACTGGTGGTGCCAAAGGTTTATCAGGAGATTCAGTTGAAAAAATCCCCAAAATCAAAATTACTACTGACAACAATGTTGATGCATCTGGTGAAAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTCAGCTTGGAGAAACAGTTAGAAGCTTACCTCATTGTCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTTAGGCATGGTTCTTGCCCATTATGCAGAAGGGATATGTAA 708 0.4336 MEFVPNPSPLRSTLFGSFGDLVERVKRIGTLAVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESSFDEVQNIFDTGGAKGLSGDSVEKIPKIKITTDNNVDASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDM 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00078 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Sebi273g00078 235 SUPERFAMILY RING/U-box 189 234 - -
Sebi273g00078 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Sebi273g00078 235 SMART ring_2 190 231 IPR001841 -
Sebi273g00078 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Sebi273g00078 235 Pfam Ring finger domain 189 232 IPR001841 -
Sebi273g00078 235 CDD RING-H2_NIPL1-like 189 232 - -
Sebi273g00078 235 FunFam NEP1-interacting protein-like 1 150 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00078 Sebi-Chr273 1022995 1024539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00078 21 235 C3H Transcription Factor Family AT5G66070 78.140 6.34e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi273g00078 - - lja:Lj2g3v1670720.1 435.261