Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00067 ATGGTGACCGAACATGACATTGAGAGCTGCGGGAGCAGAGCGATGCAGTCGTCGCAGACTAATCCTCGCCATCACCGCCAGAAACTTGAGGTGTACAATGAGGTTCTTCGTCGAATTCAGGAATCCAATTGCGAGGAGGCTCACGAACCTGGCTTCGACGATCAGCTATGGATTCACTTCAATCGTCTTCCTGCTAGGTACGCGCTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTTGCTCATAAGAGATTGCTCAAGTTGGCAGAGGACCCTGCTAATCGACCTGCATTTCAAGTTCGCTTAGTACAGGTATATCCTTTTGCTAGTGCAAATTATACTGATTCAGATCCTTCTGAGAAAGAAGATGCACAGAGTTCTGTTAACTATTCTTTTAAGCAGGGAATTCATCCACCACCTACATTTGGTTCATCCTCTAATCTTGAAGCTCTTGCACTTCAAACAACTAAAAATAACATTGAAGATGGAGGCAGTGCTATGGGTGTGACACCATATTTTGACAGGCCCATGCACGAGATTACCTTTTCAACAGTTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCAATACTTGGTGAGATTGGACTGAATATTCAAGAAGCCCATGCATTTTCCACCTCTGATGGGTTTTCTCTGGATGTCTTTGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTATTGGAAAAGGAGATTTTGAGGGTTAAGGAACAATACCCATCAAATCAGGGCATACTTTCTGCTTCCAATGAACAATACCAGATAAAGATGGAACCCTCCCCTCATTGCATACAAATACCATCCGATGGAGCTGATGTCTGGGAAATTGATCCCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTCGGTGACTTGTACAGAGGTACATATTGCAGCCAAGATGTGGCTATCAAAATTCTTAAGCCCGAGCGCATAAGTACAGATATGCTGAGAGAGTTTGCGCAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATTGGTGCATGTACTCGGCCACCAAATCTTTGTATTGTTACAGAGTTCATGTCTAGAGGAAGCCTATATGACTTTCTGCACAAACAAAGGGGTGTATTTAAGCTTCCTTCTTTACTAAAAGTAGCGATTGATGTCTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATCCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAATTGGTCAAGGTTGCTGATTTTGGGGTTGCCAGAGTCCAAACTCAGTCTGGAGTGATGACTGCTGAAACTGGAACATACCGCTGGATGGCCCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCGGATGTTTTCAGTTTTGGAATAGCTCTTTGGGAGCTTTTAACCGGAGAGCTACCTTACTCATACTTGACTCCATTACAAGCAGCAGTTGGCGTGGTGCAGAAGGGCCTACGGCCTACAATTCCCAAAAATACACATCCAAGACTTTCTGAACTGCTCCAGCGGTGCTGGCAACAAGATCCAAAGGAGAGACCAGCTTTCTGTGAAATAATTGAAATTCTTCAGAACATAGCAAAAGAGGTCAACGATGACAAAACAGATCGACACAATAAGTCATCCCATGGCTTTCTCTCAGCACTTAGACGTGCCCATCACTGA 1719 0.4386 MVTEHDIESCGSRAMQSSQTNPRHHRQKLEVYNEVLRRIQESNCEEAHEPGFDDQLWIHFNRLPARYALDVNVERAEDVLAHKRLLKLAEDPANRPAFQVRLVQVYPFASANYTDSDPSEKEDAQSSVNYSFKQGIHPPPTFGSSSNLEALALQTTKNNIEDGGSAMGVTPYFDRPMHEITFSTVDKPKLLSQLTSILGEIGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEKEILRVKEQYPSNQGILSASNEQYQIKMEPSPHCIQIPSDGADVWEIDPNQLKYENKVGSGSFGDLYRGTYCSQDVAIKILKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENELVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKNTHPRLSELLQRCWQQDPKERPAFCEIIEILQNIAKEVNDDKTDRHNKSSHGFLSALRRAHH 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00067 572 CDD STKc_MAP3K-like 298 541 - -
Sebi273g00067 572 Pfam Protein tyrosine and serine/threonine kinase 292 541 IPR001245 GO:0004672|GO:0006468
Sebi273g00067 572 ProSitePatterns Protein kinases ATP-binding region signature. 298 319 IPR017441 GO:0005524
Sebi273g00067 572 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 145 547 - -
Sebi273g00067 572 ProSiteProfiles Protein kinase domain profile. 292 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00067 572 SMART serkin_6 292 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00067 572 ProSiteProfiles ACT domain profile. 179 254 IPR002912 -
Sebi273g00067 572 SUPERFAMILY Protein kinase-like (PK-like) 269 541 IPR011009 -
Sebi273g00067 572 MobiDBLite consensus disorder prediction 551 572 - -
Sebi273g00067 572 PRINTS Tyrosine kinase catalytic domain signature 403 421 IPR001245 GO:0004672|GO:0006468
Sebi273g00067 572 PRINTS Tyrosine kinase catalytic domain signature 468 490 IPR001245 GO:0004672|GO:0006468
Sebi273g00067 572 PRINTS Tyrosine kinase catalytic domain signature 512 534 IPR001245 GO:0004672|GO:0006468
Sebi273g00067 572 PRINTS Tyrosine kinase catalytic domain signature 449 459 IPR001245 GO:0004672|GO:0006468
Sebi273g00067 572 PRINTS Tyrosine kinase catalytic domain signature 366 379 IPR001245 GO:0004672|GO:0006468
Sebi273g00067 572 Coils Coil 229 249 - -
Sebi273g00067 572 Gene3D Phosphorylase Kinase; domain 1 282 370 - -
Sebi273g00067 572 MobiDBLite consensus disorder prediction 1 27 - -
Sebi273g00067 572 CDD ACT_TyrKc 177 244 - -
Sebi273g00067 572 FunFam serine/threonine-protein kinase HT1 371 562 - -
Sebi273g00067 572 SUPERFAMILY ACT-like 177 241 IPR045865 -
Sebi273g00067 572 Gene3D Transferase(Phosphotransferase) domain 1 371 568 - -
Sebi273g00067 572 FunFam Serine/threonine-protein kinase isoform 1 282 370 - -
Sebi273g00067 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00067 Sebi-Chr273 854989 864776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00067 2 571 MAP Kinase Kinase Kinase AT4G35780 69.913 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi273g00067 PK_Tyr_Ser-Thr 6.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi273g00067 - - gmx:100816767 1050.04