LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi273g00054	ATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGGCGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATTTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCCGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAGTAACACAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGGTGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAAAAGCCTCAAATTTCCTAAAAATTCCTGCATATGAACTTCGCACTTCATATATTGTCAAGGGTGGAGATAAAAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAACATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGTAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG	1332	0.3566	MLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIADLKEVTQNSVFVTIGTVKDIESEYNWCYRACKKCSLGLKLGGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKKASNFLKIPAYELRTSYIVKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVTLIQDNSELLSQFTESSDLLKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKLRKVIKEEKN	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi273g00054	443	Pfam	Domain of unknown function DUF223	4	58	IPR003871	-
	Sebi273g00054	443	SUPERFAMILY	Nucleic acid-binding proteins	44	170	IPR012340	-
	Sebi273g00054	443	Gene3D	-	193	359	IPR012340	-
	Sebi273g00054	443	SUPERFAMILY	Nucleic acid-binding proteins	201	338	IPR012340	-
	Sebi273g00054	443	CDD	RPA1_DBD_B_like	64	169	-	-
	Sebi273g00054	443	PANTHER	OS03G0429900 PROTEIN	99	337	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Sebi273g00054	443	Pfam	Replication factor-A C terminal domain	215	333	IPR013955	-
	Sebi273g00054	443	Gene3D	-	38	180	IPR012340	-
	Sebi273g00054	443	CDD	RPA1_DBD_C	203	333	IPR047192	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi273g00054	Sebi-Chr273	741448	743707	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi273g00054	9	298	Core DNA Replication Machinery Family	AT2G06510	24.688	3.21e-15	75.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi273g00054	-		-	adu:107477146	382.104