Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00038 ATGGGAGGTGACGCTGCAGCTGAGGGTGTGACGGAGCCTAAGGCCGCTGATGGAGGAGTCACCATCAACATTCGCTGCTCCAATGGTTCTAAGTTTTCTGTTCATATTAATCTCGAATCCCTCGTCGGATCCTTCAAGGAGGTCGTCGCTCGGAACTGTGACATCCCCGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAAACCCTGCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCACCTTCTAATGCAACCAGTGGGACTAATAATAGTGGTGCCAATACCACAACAACTAATACGAGAGGTGCTAGTGCTAATGAGGGTGGTGGCTTAGGAGGGCCTGGAATGGGAGCTTCACTGTTCCCGGGACTAGGTACCAATGGGATGGGAGGCAGTGGCCTCAATGGCTTATTTGGAGCGGGCCTTCCAGATCTTGAACAAATGCAGCAACCATTTTTATCAAATCCCAATTTAGTGAGAGAAATAATGAATACACCTGCTATGCAGAATTTAATAAATAATCCTGATATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTAAATGATCCCAGCACTCTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCAACCACGATGGCTGGTCATACAGGAAATGATAGTGCAGTCAGGAATCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTTCCCCTGTACCCAATACTAATCCGCTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGTACCCAAAGTAATACCAGAAGGTCAACTACTGGTGGGGATGCTCGACAGCAGACACCCACTCCCACTGGCTTAGGTGGGCTTGGTCTGCCAGATCTTGAAGGCATGTTGAGTGGTACACCAGATGCTGCTTTATTGACCCAACTAATGCAAAATCCAGCTATTTCACAGATGATGCAAAGTATCCTTTCCAACCCACAGACTATGAATCAGATTCTTGGTTTCAATGCTGAGCAGCGTGGAATGCCTGATCTAAATTCTCTGAGAGAAGTGATGCAAAACCCAGAATTTCTTCGCCTGTTCTCCTCACCTGAAACTCTGCAGCAACTTTTGTCTTTCCAGCAAGCTCTTCTTTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGATCGATGAACAACTTGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCCCCAGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCTGGACAGTAG 1608 0.4701 MGGDAAAEGVTEPKAADGGVTINIRCSNGSKFSVHINLESLVGSFKEVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNATSGTNNSGANTTTTNTRGASANEGGGLGGPGMGASLFPGLGTNGMGGSGLNGLFGAGLPDLEQMQQPFLSNPNLVREIMNTPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGHTGNDSAVRNQSTNPSTTSSEATSPVPNTNPLPNPWSSTGTGGTQSNTRRSTTGGDARQQTPTPTGLGGLGLPDLEGMLSGTPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGFNAEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGSMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00038 535 MobiDBLite consensus disorder prediction 93 124 - -
Sebi273g00038 535 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Sebi273g00038 535 Gene3D - 475 535 - -
Sebi273g00038 535 CDD UBA_PLICs 493 531 - -
Sebi273g00038 535 MobiDBLite consensus disorder prediction 440 461 - -
Sebi273g00038 535 SUPERFAMILY UBA-like 489 531 IPR009060 GO:0005515
Sebi273g00038 535 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Sebi273g00038 535 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Sebi273g00038 535 CDD Ubl_Dsk2p_like 20 92 - -
Sebi273g00038 535 Gene3D - 193 251 - -
Sebi273g00038 535 SMART CBM 394 429 IPR006636 -
Sebi273g00038 535 SMART CBM 340 391 IPR006636 -
Sebi273g00038 535 SMART CBM 198 237 IPR006636 -
Sebi273g00038 535 SMART CBM 148 185 IPR006636 -
Sebi273g00038 535 MobiDBLite consensus disorder prediction 274 343 - -
Sebi273g00038 535 FunFam Ubiquitin domain-containing protein DSK2b 476 534 - -
Sebi273g00038 535 MobiDBLite consensus disorder prediction 274 353 - -
Sebi273g00038 535 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 487 532 IPR015940 -
Sebi273g00038 535 SMART ubq_7 20 91 IPR000626 GO:0005515
Sebi273g00038 535 MobiDBLite consensus disorder prediction 93 118 - -
Sebi273g00038 535 PANTHER UBIQUILIN 15 530 IPR015496 -
Sebi273g00038 535 Gene3D - 9 105 - -
Sebi273g00038 535 Pfam UBA/TS-N domain 493 529 IPR015940 -
Sebi273g00038 535 SMART uba_6 493 531 IPR015940 -
Sebi273g00038 535 SUPERFAMILY Ubiquitin-like 13 107 IPR029071 -
Sebi273g00038 535 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00038 Sebi-Chr273 523667 527894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00038 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.47e-06 45.8