Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00030 ATGATTCCAAACTTGCTTAATGATCTTCATATGATATACAAGTTGGACTGGAAGGAGGAAAACAAAGATATACCACAAGACTCTACAAGGGAAGAATGGAAAGGAGACAACAATGATTGCCAACAATCTCCAAGAGTCTCACCCGTGTTGGATCTGGATCTCAATTGTCTTCCTTATGAAGAAGACAAGCCTGAGTTACCCGACAATGAGATAGAGGCTGAATGCTTACAAGGTTCAGAATCAATGCTCTCAGGTTTGGGAGGAAAGAAAAAGAGGGCTCCCAGTGACCATGTAGCGAAAATTTCTTTTTCAGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCATCAAGACATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAATGCAGAGAATTTGGTATTCCCCGGTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCAGGAAGTGGCAAAACACCCAGAATTGGAGGATGAGGCTGCAGCCATGGCAGTGACAAGCAGGCAAAAGATGTTGGAGAATGAAAAGGAAAACATAGAGAAGAAACCCTTCATGGACATACAAAGTGAGACCAAGAGATTCAGGCAGGATGTTTTCAAGAGAAGGCATAGAGCTAGAGCTATTGAGAAACAGAGTTCTACAGCGGCTTTTGGAAAACATGCAAGAGGTGTTCTGTTTAATTGTGGAAATATTTCTTCCCTTCAAGTGAGAGGTTCAGGGAGTACTAATAATAATAATGACACTAAGAAGAACGTGGCTATGGCATCCTGTGCTAGTAGTGTTCAACTTTGGGAAGGAACAACCACAAGTGGGAAGCTTCTAGAAATTACTCCAAACTTGAAGGTGTTTACTTTTGCAGATTTGAAAGCAGCCACCAAAGGTTTTAAATCAGATGCATTGCTTGGAGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGGATGAGAAGACTCTGAGTCCTGCCAAAGCTGGTTCAGGAATGATGGTAGCCATAAAGAAATTGAAACCTGAAAGTATGCAAGGGGTTCAAGAGTGGCAGTCAGAAATCAACTTTTTAGGAAGCGTTTCTCACCCCAACTTGGTCAAGCTATTGGGTTACTGTAGGGAAGATGACGAATTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTGGAGAATCACCTCTTCAGAGGAGATATTAACATTGGATCACTTTCTTGGAACACTCGACTCAAGATAGCTATTGGTGCAGCTCGGGGCTTGGCTTTCTTGCACACATCAGAAAAGCAAGTTATATACAGAGATTTCAAGGCCTCCAATATACTACTTGATGGGAATTTCAATGCAAAAATTTCAGATTTTGGCTTGGCTAAATTTGGGCCTTCTGGGGGAGATTCACATGTGACTACCAGGATCATGGGCACATTTGGCTATGCTGCCCCAGAGTACATTGCAACAGGTCACTTGTATGTGAATAGTGATGTTTATGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGGTTGCAAGCATTTGATACAAAGAGGCCCCAAGGGGAGCAGAATCTAGTTGAATGGATTAAGCCTTCTCTCTCTGATAAAAGAAAGTTGAAAACTTTTGTGGATGTCAGGATAGAGGGACAATATTCACTCAAGGCAGCATTGGAGGCAGCACAACTTACTCTAAAATGCCATGAACCTGACCCTAAAAAACGCCCTTCTATGAAAGATGTTTTGGCAACATTGGAAAGCATTGAAGCTATTAAGGATAAAAGGAAGGTGTCCAAGAAACACTGTACTATGTCTGCAGCTATGCATAATTTCCACTAG 1839 0.4165 MIPNLLNDLHMIYKLDWKEENKDIPQDSTREEWKGDNNDCQQSPRVSPVLDLDLNCLPYEEDKPELPDNEIEAECLQGSESMLSGLGGKKKRAPSDHVAKISFSDLVKYFDMPIVEASRHLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEVAKHPELEDEAAAMAVTSRQKMLENEKENIEKKPFMDIQSETKRFRQDVFKRRHRARAIEKQSSTAAFGKHARGVLFNCGNISSLQVRGSGSTNNNNDTKKNVAMASCASSVQLWEGTTTSGKLLEITPNLKVFTFADLKAATKGFKSDALLGEGGFGKVYKGWLDEKTLSPAKAGSGMMVAIKKLKPESMQGVQEWQSEINFLGSVSHPNLVKLLGYCREDDEFLLVYEFMPKGSLENHLFRGDINIGSLSWNTRLKIAIGAARGLAFLHTSEKQVIYRDFKASNILLDGNFNAKISDFGLAKFGPSGGDSHVTTRIMGTFGYAAPEYIATGHLYVNSDVYGFGVVLLEMLTGLQAFDTKRPQGEQNLVEWIKPSLSDKRKLKTFVDVRIEGQYSLKAALEAAQLTLKCHEPDPKKRPSMKDVLATLESIEAIKDKRKVSKKHCTMSAAMHNFH 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00030 612 Coils Coil 170 190 - -
Sebi273g00030 612 ProSiteProfiles RWP-RK domain profile. 83 168 IPR003035 -
Sebi273g00030 612 CDD STKc_IRAK 309 588 - -
Sebi273g00030 612 Gene3D Phosphorylase Kinase; domain 1 287 388 - -
Sebi273g00030 612 MobiDBLite consensus disorder prediction 23 38 - -
Sebi273g00030 612 PANTHER OS01G0588500 PROTEIN-RELATED 250 589 - -
Sebi273g00030 612 Gene3D Transferase(Phosphotransferase) domain 1 389 609 - -
Sebi273g00030 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Sebi273g00030 612 MobiDBLite consensus disorder prediction 23 44 - -
Sebi273g00030 612 FunFam Serine/threonine-protein kinase BIK1 273 388 - -
Sebi273g00030 612 Pfam Protein kinase domain 304 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00030 612 SUPERFAMILY Protein kinase-like (PK-like) 280 586 IPR011009 -
Sebi273g00030 612 Pfam RWP-RK domain 101 148 IPR003035 -
Sebi273g00030 612 FunFam Serine/threonine-protein kinase PBS1 389 603 - -
Sebi273g00030 612 ProSiteProfiles Protein kinase domain profile. 303 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00030 612 ProSitePatterns Protein kinases ATP-binding region signature. 309 342 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00030 Sebi-Chr273 363530 373968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00030 283 585 Glycoside Hydrolase AT3G07070 48.366 2.76e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi273g00030 Pkinase 6.9e-47 CL0016
TF RWP-RK Sebi273g00030 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi273g00030 - - qsa:O6P43_033520 529.635