Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00019 ATGTCGTGCTCATCTTCATCAGGGTCGGAGGAAGATGATGAGGGATTCGACTCCTACCGGAAAGGAGGCTACCACGCCGTCAGGGTCGGCGATCAGTTCGCCAGCGGCAGGTACATAGCGCAGAGGAAACTGGGTTGGGGTCAATTCTCCACCGTCTGGCTTGCTTATGATACTAACACCTCTCCCAGTTTTGTTCAGGCTGCTCTTCATGAGATCAATGTTCTTTCATCCATTGCTGATGGCGATCCATCAAATTCAAAGTTTGTTGTCCAATTGATTGACCACTTTAAGCACACAGGTCCAAATGGACAGCACCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGTTTGCTTCGTTTGATCAGATATAACCGTTACAAAGGTCTTCCACTGAATAAAGTTAGAGAGATTTGCAAGTGCGTTCTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATATTGCCAAAGACCCTTTTAAATCTGGACTCTCCCCAATTCTAGAGAGGCCTGAGGGAAACACAAATGGAGGAACAGGGGAAGCTGAAAAGTCTGGTAGAAATATTGATGGGATTGATGTGAGATGCAAGATAGTTGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCTCCTGAAGTTATACTGAAGGCTGGCTATTCCTTCCCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAACTTGCCACCGGAGATATGTTATTCACACCGAAGGGTGGACAAGGTTATAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCAACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGAATTCGAAGGCTAAAATTTTGGCCACTTGACAAATTGCTGGTTGATAGATATAAATTTTCAGTGAATGATGCTCGTGAGTTTTCAGAATTTGTTGTACCACTTCTTGATTTTGCACCAGAGAAGCGACCAACTGCAAGACAGTGCCTGCAACACCCATGGTTGAATTGCAAGGAATCAACTCCAAATGAAATGATAAATGAATCTACAATGGAAAAGGTGGATGTTGGAATGAGCAACCTTAAAATCAAGGTGGGAAAGTGA 1218 0.436 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFASGRYIAQRKLGWGQFSTVWLAYDTNTSPSFVQAALHEINVLSSIADGDPSNSKFVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCVLIGLDYLHSELGIIHTDLKPENILLCSTIDIAKDPFKSGLSPILERPEGNTNGGTGEAEKSGRNIDGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILKAGYSFPVDMWSFACIAFELATGDMLFTPKGGQGYSEDEDHLALMMELLGKMPRKIATAGAQSKDFFDRHGDLKRIRRLKFWPLDKLLVDRYKFSVNDAREFSEFVVPLLDFAPEKRPTARQCLQHPWLNCKESTPNEMINESTMEKVDVGMSNLKIKVGK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00019 405 ProSiteProfiles Protein kinase domain profile. 13 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00019 405 MobiDBLite consensus disorder prediction 184 203 - -
Sebi273g00019 405 CDD STKc_SRPK 27 373 - -
Sebi273g00019 405 FunFam Serine/threonine-protein kinase SRPK 106 373 - -
Sebi273g00019 405 Pfam Protein kinase domain 41 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00019 405 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 198 381 - -
Sebi273g00019 405 SUPERFAMILY Protein kinase-like (PK-like) 32 376 IPR011009 -
Sebi273g00019 405 SMART serkin_6 38 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00019 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Sebi273g00019 405 Gene3D Transferase(Phosphotransferase) domain 1 81 373 - -
Sebi273g00019 405 Gene3D Phosphorylase Kinase; domain 1 24 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00019 Sebi-Chr273 223103 226707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00019 184 374 EF-hand Containing Proteins AT5G22840 58.639 1.70e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Sebi273g00019 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi273g00019 K08832 - gmx:100784192 716.457