Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00013 ATGCCAAGGGTCACTTTTGCCCATAAAGGGACAAGGGGAACAAGAATATCCCCTGGTGAGGCAATTCATCCAACCATGATTAAAGTTTGGGTCTTGGCTTCAATGATTCTCTACAATGGTTTCCTTTCAACTGGGACTGGCATGAATAATTCCACAAGACCTGATTTTGTAAATATTGGGGCTCTCTTCTCCTTCAATACCACTGTTGGTAGAATTATAAAAATTGCTATAGAAGCTGCAGTTGAAGATGTAAATTCGGATCCAAATATTCTTGGCAAGACCAAGCTGAAGCTCTCACTTCAAGAAGATTCTAAATACAGAGGTTTTCTAAGCATTGCTGAGGTTTTGCAGGTCATGGCAAGACACACTGTGGCAATAATTGGCCCCCATAGCTCTGTGACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTCTGGATCCCACACTTTCCTCACTTCAATTCCCATTCTTTATTAGAACTTGTCATAGTGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGATGGAAAGAAGTTATTGCTGTCTATATTGATGATGATAATGGGAGGAATGGGATTGGTGCATTAGGTGATAAGCTTGCTGAGAGACGTTGCAGGATCTCATATAAAGCGCCTTTGAGCCCGGAAGCAACTCGGGAGGAGATTACAAATGTGCTTGTTCAAGTGGCACTTGCAGAATCACGGGTCATAGTTGTTCATGCCAATACTTTATGGGGCCCCAAGGTGTTTAGTGTTGCAAAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCAACTGCTTTTCTCTCTGCTCTGCTTGATATAAATAATCCCCTCCCTTCAGATGCAATGGATGACATTCAAGGAGTTTTAACACCACGTGTGTACACACCAGATTCAGAGCTCAAAAGAAGGTTTGTTTCTAGGTGGAAAAACTTGACTCGTGGGAATACTGCTAATGGCCCCCTTGGATTGAGTTTTTTATCTCTTTATGCTTATGATACTGTTTATGTGCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACCAAATTACATTCTCAAATGATTCAAAGTTATCTGTATTACATGGAGACAACTTGCATCTTGATGCCTTGAACATCTTTGATGAAGGGAATTTGTTACGTAGAAACATTTATGATGTTAACATGACTGGTGTAACAGGAACATTCAAGTATACATCTGATGGAAGCCTTGTTAATCCTGCATATGAAATCATCAATGTGGTTGGAACTGGGTCTCGTAGGATTGGTTATTGGTCTAATTACTCTGGATTAACAGTTGTTCCCCCAGAATCTCTTTATTCCAAACCAGCCAATCGTTCCAGGGCAAATCAGAAGCTATTCCCTGTGATTTGGCCTGGAGATACAGACCAAAAGCCTCGTGGTTGGGTTTTTCCAAACAGTGGAAGGCTTTTAAAAATTGGAGTACCAAAAGGTGTCAGTTATCGTGAATTTGTCTCACAAATACCAGGCACTGATACATTTCAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTTTTGCCTTATGCAGTCCCTTATAAGTTTATCCCATATGGGGATGGTAAGAACAATCCTAGTATCACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAAATGGTGGATTTTACTCAGCCATATATTGAATCTGGTCTAGTGGTAGTAGCCCCAGTTAAGGAGTCAGAAACCAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGCTTGTCACAGCTATCTTTTTCATATTAGTGGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAGTTTAGGGGACCACCCAAAAAACAAGTAGTTACTATTTTATGGTTTAGTTTTTCTACTATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGCTGCTTATATGGCTTTTTGTAGTTCTGATAATTAACTCAAGTTACACAGCAAGCCTAACCTCAATCCTCACAGTGCAGCAGCTTTCTTCCCCCATTAAAGGCATTGAAAGTTTAGCAAATAGCAAAGAACCCATCGGGTACACACAGGGTTCATTTGCTAAAAATTATTTAATTCAGGAAATTGGTATTGATGAGTCAAGACTTGTTCCTTTAAGAACACCAGAAGAATCTGCTAGAGCACTGAAAAAGGGTCCCCAAAATGGTGGCGTTGCTGCTTATATTGATGAGCGTGCCTACATTGACCTCTTCCTTTCAAGCCAGTGTGAACTTACTGTTGTAGGTCAAGAGTTCACAAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCACCATTAGCAGTTGACCTGTCAACTGCCATTTTGCAATTAACAGACAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGAGCTTGCATATCACAAGGTGCAAAGCTTAAAGTGGAAAGACTCAAACTAAAAAGCTTCTGGGGCCTTTATGCAATCTGTGGATCTGCCTGTCTGCTTGCTCTATTCATATATCTTATACAGATAATTAAGCAGTACAGCAAGCACTACTCTGAGGAACATGTGTTTAGTGATCAAAACTCTGGATCAGGATCTTCACGTATACGGACTTTCCTTTCATTTGCGGATGAAAAAGAAGAGACAGTTAAGGACCCGCGCAAAGAGAAGGAAAATGGAGAGGATCTCATACAGAGGCAATGA 2817 0.4093 MPRVTFAHKGTRGTRISPGEAIHPTMIKVWVLASMILYNGFLSTGTGMNNSTRPDFVNIGALFSFNTTVGRIIKIAIEAAVEDVNSDPNILGKTKLKLSLQEDSKYRGFLSIAEVLQVMARHTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIGALGDKLAERRCRISYKAPLSPEATREEITNVLVQVALAESRVIVVHANTLWGPKVFSVAKNLGMMGTGYVWIATAFLSALLDINNPLPSDAMDDIQGVLTPRVYTPDSELKRRFVSRWKNLTRGNTANGPLGLSFLSLYAYDTVYVLAHALDAFFKQGNQITFSNDSKLSVLHGDNLHLDALNIFDEGNLLRRNIYDVNMTGVTGTFKYTSDGSLVNPAYEIINVVGTGSRRIGYWSNYSGLTVVPPESLYSKPANRSRANQKLFPVIWPGDTDQKPRGWVFPNSGRLLKIGVPKGVSYREFVSQIPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSITELVRLITTGEFDGAVGDIAITTERTKMVDFTQPYIESGLVVVAPVKESETSALAFLAPFTPRMWLVTAIFFILVGTVVWILEHRVNDEFRGPPKKQVVTILWFSFSTMFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLANSKEPIGYTQGSFAKNYLIQEIGIDESRLVPLRTPEESARALKKGPQNGGVAAYIDERAYIDLFLSSQCELTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQLTDNGDLQRIHDKWLLSRACISQGAKLKVERLKLKSFWGLYAICGSACLLALFIYLIQIIKQYSKHYSEEHVFSDQNSGSGSSRIRTFLSFADEKEETVKDPRKEKENGEDLIQRQ 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00013 938 Pfam Bacterial extracellular solute-binding proteins, family 3 517 837 IPR001638 -
Sebi273g00013 938 CDD PBP1_GABAb_receptor_plant 58 454 IPR044440 -
Sebi273g00013 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 57 901 IPR015683 -
Sebi273g00013 938 Pfam Receptor family ligand binding region 75 435 IPR001828 -
Sebi273g00013 938 FunFam Glutamate receptor 492 608 - -
Sebi273g00013 938 Gene3D - 498 607 - -
Sebi273g00013 938 Gene3D - 75 425 - -
Sebi273g00013 938 SUPERFAMILY Periplasmic binding protein-like II 474 839 - -
Sebi273g00013 938 SMART GluR_14 498 839 IPR001320 GO:0015276|GO:0016020
Sebi273g00013 938 FunFam Glutamate receptor 608 738 - -
Sebi273g00013 938 Pfam Ligand-gated ion channel 838 869 IPR001320 GO:0015276|GO:0016020
Sebi273g00013 938 Gene3D - 608 739 - -
Sebi273g00013 938 PIRSF IGluLR_plant 25 937 IPR017103 -
Sebi273g00013 938 FunFam Glutamate receptor 173 329 - -
Sebi273g00013 938 Gene3D - 785 844 - -
Sebi273g00013 938 MobiDBLite consensus disorder prediction 915 938 - -
Sebi273g00013 938 CDD GluR_Plant 497 837 - -
Sebi273g00013 938 FunFam Glutamate receptor 734 841 - -
Sebi273g00013 938 SUPERFAMILY Periplasmic binding protein-like I 52 489 IPR028082 -
Sebi273g00013 938 Gene3D - 173 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00013 Sebi-Chr273 179604 184954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00013 30 934 Ion Channels AT3G51480 58.564 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi273g00013 K05387 - gmx:100793320 1533.47