Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi273g00012 ATGTATTTGGTTGACAGTGCTTCTGGGAGGGTTATTTGGTCTTTTTCCACTGGATCCCCAATCTACCATTCTTATCAAGTATCCAACAACGACAATGTTTCTGGCCTCATCGAATGCGGTGACGATTGGGAATTAATCATTCACGACACCCACTTTGGTAAAACGAGATTATCAGAGTCTGTTGCTGATTATGTTGCTTTCACACCTACTGTGTCAAATGATGGAGCGGTTGTGCTTGGATCCAAAAGAAGCACTATATTTGAAGTGGATGCTAAAACTGGAAGGCTACTTCGAAGTTACGGTGCCCTTGATTATGACAATGCTTCCTCTACTGCAGTGTGGAGTGATGACAAGCAGGATGTTGGAAATCTTATCGGTACAAATAACAATGAGCTTGCTGATCCTGCAAAGCTTAATCATCCGGAGTTCTTGCTTAAGATAATTAGGACAGATTATTTTTTACAATCTGTTGGTCCTGGGTCAGGACTAGTGTTGTGGACCATGTCAGTAGCTGAGTTTAAGGCTGTATTAGTTTGTCAGTATAATGAAAATTCTTCTGGTAGGACTTCATTTGATGTGGAAGGTGAGCATAATGAAAATCCTTCTGGTAGGACTTCATTTGATGTGGAAGGTGAATATGTTTTTGAAAGTGACAGTGTCTTGGATTTTGCTATGCCATATGCATGTCAAGACAGAAAACTGAAAGAAGTCTATCGCCAGCGGAAGAATTTTCAGTTAGAACCTGAAAAATTATCTGGGAGTTATCAAGAGAATGATATGCTTCCAATGCCTACTCCAAATCTTATGCTTCCATCACAGCCTGATATTGATAGATTCATCCCTGATCATGATGGTAATAAAATGCTTCCTGTGACCGTGCCAAATTCTTTGCAGCCAGAAATCGGCTTCTATGACAGTAAAAGGATGATTGAATGGCCAGCAGAACGTGTCATATTGGTTATGGTTCTCGTTGCTTTCACTTTGATCTTCTACGGGCTTCTAGGGGTTAAAAATCAAGATAAATTGAAGAACCAAATTAGTGAACCATATTTAAAAATCCCACCTCCTAAGAAAAAGAGAGCACGTAAGTCAGGAAAAAACAATATCATTGTTGACAAACAGGATAAGAACCTGTCATCAACAGACGAGGATATACTGACACATAAGGAAACTGAAAGTGAAGCAGGGTTGAACTTGTATAAAGTTGATGGACGAAGGATTGGTAAACTATCTGTATCAAATAAAGAAATTGCTAAGGGAAGCAATGGTACCATTGTCCTTGAGGGGATATATGAAGGCCGGGCAGTTGCTGTCAAACGTCTTGTCCAGGCTCATCATGATGTAGCTCATAAAGAAATCCAAAATCTCATTGCATCTGACTTTCATCCAAACATTGTCCGATGGTATGGGGTGGAATATGATCAAGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCATGCAACTTGGATGATTTGATTCATGTCTATGCGGATATATCAGAAAACCCCATGTTTAGCGAGAAGCAAGCTTTTAAATTTTTCAAGAAGGTTCAGATGGAGACAGGGAGGGATGGTATACAATATCTTTGGAAAGCAAATGGTTATCCATCACCTCTATTACTGAAACTGATGAGGGATGTAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCGCAAAATGTTTTGATAATCAATGAAAGATCATTATGTGCCAAGCTTTCTGATATGGGGATTAGCAAACGCCTTCTTGAAGATATGTCTTCTTTGGGTCATAGTACTACTGGGAGACATCCATTTGGAGAACGTCTTGAGCGTGATGTCAATATTGTGAAAAATAAAAAAGATCTTTTCTTAGTGGAGTTCATGCCTGAAGCTGAAGATCTTATTTCTTGTTTATTACATCCTGACCCTGATCTAAGGCCAAAGGCGATTGAAGTATTGCACCATCCTCTTTTTTGGAGTTCTGAGATGAGACTTTCATTTCTTCGTGACGTCAGTGATAGGGTGGAACTTGAAGATAGAGAGACTGATTCTGATATTTTGAAGGCATTAGAAAGCATTGCTCCAGTGGCTTTAGGTGTAAAATGGGATGAAAAGTTGGAACCAGCATTCCTTACTAACATTGGTCGTTACAGGCGATATAAATTTGACAGTGTTCGGGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTATAGAGAATTGCCTCAAGAAATCCAGGAATTGGTAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCGAGGCTCTTGATTGAAGTGTACAAAGTTATCTGCAAATATTGCAAAGACGATGAATGTTTTCAAAGGTATTTCAGAGGCATTGATTAG 2391 0.3952 MYLVDSASGRVIWSFSTGSPIYHSYQVSNNDNVSGLIECGDDWELIIHDTHFGKTRLSESVADYVAFTPTVSNDGAVVLGSKRSTIFEVDAKTGRLLRSYGALDYDNASSTAVWSDDKQDVGNLIGTNNNELADPAKLNHPEFLLKIIRTDYFLQSVGPGSGLVLWTMSVAEFKAVLVCQYNENSSGRTSFDVEGEHNENPSGRTSFDVEGEYVFESDSVLDFAMPYACQDRKLKEVYRQRKNFQLEPEKLSGSYQENDMLPMPTPNLMLPSQPDIDRFIPDHDGNKMLPVTVPNSLQPEIGFYDSKRMIEWPAERVILVMVLVAFTLIFYGLLGVKNQDKLKNQISEPYLKIPPPKKKRARKSGKNNIIVDKQDKNLSSTDEDILTHKETESEAGLNLYKVDGRRIGKLSVSNKEIAKGSNGTIVLEGIYEGRAVAVKRLVQAHHDVAHKEIQNLIASDFHPNIVRWYGVEYDQDFVYLALERCACNLDDLIHVYADISENPMFSEKQAFKFFKKVQMETGRDGIQYLWKANGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLIINERSLCAKLSDMGISKRLLEDMSSLGHSTTGRHPFGERLERDVNIVKNKKDLFLVEFMPEAEDLISCLLHPDPDLRPKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETDSDILKALESIAPVALGVKWDEKLEPAFLTNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFNDYFASRFPRLLIEVYKVICKYCKDDECFQRYFRGID 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi273g00012 796 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 2 215 IPR011047 -
Sebi273g00012 796 Gene3D Transferase(Phosphotransferase) domain 1 376 662 - -
Sebi273g00012 796 ProSiteProfiles Protein kinase domain profile. 411 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00012 796 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 664 796 - -
Sebi273g00012 796 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 403 483 - -
Sebi273g00012 796 Gene3D - 1 208 IPR015943 GO:0005515
Sebi273g00012 796 SMART serkin_6 411 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi273g00012 796 PANTHER IRE1-RELATED 57 602 IPR045133 GO:0004521|GO:0004674|GO:0030968
Sebi273g00012 796 Gene3D KEN domain 663 795 IPR038357 -
Sebi273g00012 796 ProSiteProfiles KEN domain profile. 663 794 IPR010513 GO:0004540|GO:0006397
Sebi273g00012 796 Pfam Ribonuclease 2-5A 666 792 IPR010513 GO:0004540|GO:0006397
Sebi273g00012 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Sebi273g00012 796 CDD RNase_Ire1 664 792 - -
Sebi273g00012 796 SMART PGNneu 725 779 - -
Sebi273g00012 796 SUPERFAMILY Protein kinase-like (PK-like) 415 675 IPR011009 -
Sebi273g00012 796 Pfam Protein kinase domain 414 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi273g00012 Sebi-Chr273 172893 178365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi273g00012 437 659 MAP Kinase Kinase Kinase AT3G06030 24.809 5.15e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Sebi273g00012 Pkinase 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi273g00012 K08852 - gmx:102661527 1043.49