Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00087 ATGGCAATGGGAGGGTTTATGGACCTGGATGAACCTAATCATGAATTTTCATCCTCCACTGAAGGAGATGCTACAAAAGATAGTGATGAACACAGTGGTGCGAAAGTGGTGAAGGATGCAACTATTGATGTTGGTAATAATAAGGGTAAGGGTAAGATGCCAATGTGTTGTTGTGAGTCAGGAGAAAATGTTGCAACAAACAACATAGAATCGAAGGGTAATGGTTGGGAAGTGACACACTCTGAATTTTCTAATGTGAATGTGAATGAGGTCTCTAATACTCCTCCTTTATCAACTGATGGTGGCAATTTCAAAACTCTGTGTTCGTTTGATGAGGTGGAGGTCATTCCAGATCCTTCTTTTACACCTGCTGGCCAACATGGTGATGAAGAAGGTAACAGAGTTACTGAAGGAAACATATCACTTCAAGATGAGGAGAATGTTGTAGCTGATGCTGCTGATGATGAGGAGTCTAAAAGAGGAAGAGAGAGAGAGAGCAACCTTGTGATGAAATACAACAAGAGGCCGAGGAGGAAGATTGATCAAAGAGTAGTAGTCCAACTTGAGAGCCGCATGGACATACTGGATGATGGTTATCGCTGGCATAAGTATGGACGCAAGAATATCAAAGGAAGTCCATACCTTAGGAGCTACTACAGGTGCTCGAATAATGGATGCAGTGCAAGGAAACAGGTGCAAAGGGATGTAAATAATTCAAGATGTGTAAAAACAACATATGATGGAAGGCATAATCATGGAGTGCCAAGCAACGCAAGAATCATTAACCCACCCATAATTAAGCCAAAACCCCAAACTATTAGGGAAGAGATTGAAGCTGCTAATGTGATGGTCACTTTTGCAATACCACCTGGGACTACTGCAAGGCTGCCTAGGCCTACACAAACTTCTCCTCCACCTCATCCTAATCACAACACATTTCTGAGGCGCAATTTGGTTGAAAATATCAATTATAATCATCATGGTGATGGATCTTCTTCCTCTGCATACCAAATGCCCCATTCTTATCGTGGTTCCAATGAAGGAGGGTTGAATCCTAATAACCGTTATTGTAATAGTAACGCCCCTTTGCAAGGTGGATTCGGTCCCTCATCAATGCTTCCTGGTTTTCGTCCATTTAATTATATTCCACCCGATCAACATGGTAGAGTTCATAACAATGGGACCGGTTCAGTTTTTCCCTTTAGAGCAAAACCTGCTGAAGGTGATCACTGGAATGGATGA 1242 0.4219 MAMGGFMDLDEPNHEFSSSTEGDATKDSDEHSGAKVVKDATIDVGNNKGKGKMPMCCCESGENVATNNIESKGNGWEVTHSEFSNVNVNEVSNTPPLSTDGGNFKTLCSFDEVEVIPDPSFTPAGQHGDEEGNRVTEGNISLQDEENVVADAADDEESKRGRERESNLVMKYNKRPRRKIDQRVVVQLESRMDILDDGYRWHKYGRKNIKGSPYLRSYYRCSNNGCSARKQVQRDVNNSRCVKTTYDGRHNHGVPSNARIINPPIIKPKPQTIREEIEAANVMVTFAIPPGTTARLPRPTQTSPPPHPNHNTFLRRNLVENINYNHHGDGSSSSAYQMPHSYRGSNEGGLNPNNRYCNSNAPLQGGFGPSSMLPGFRPFNYIPPDQHGRVHNNGTGSVFPFRAKPAEGDHWNG 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00087 413 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 112 300 IPR044810 GO:0003700
Sebi272g00087 413 Pfam WRKY DNA -binding domain 196 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi272g00087 413 Gene3D WRKY domain 180 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi272g00087 413 ProSiteProfiles WRKY domain profile. 190 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi272g00087 413 MobiDBLite consensus disorder prediction 14 37 - -
Sebi272g00087 413 MobiDBLite consensus disorder prediction 290 357 - -
Sebi272g00087 413 SMART WRKY_cls 195 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi272g00087 413 MobiDBLite consensus disorder prediction 307 357 - -
Sebi272g00087 413 MobiDBLite consensus disorder prediction 1 40 - -
Sebi272g00087 413 SUPERFAMILY WRKY DNA-binding domain 189 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00087 Sebi-Chr272 1271353 1273423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00087 129 256 WRKY Transcription Factor Family AT5G56270 41.406 3.45e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi272g00087 WRKY 4.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00087 K18835 - mof:131154508 145.976