Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00081 ATGGCATCAATGAACTGGTTAGGTTTCTCTCTCTCCCCTCAACAACCTAACGAAGACAACAACCACTCTCAAACGGTGGCGCCTCGCCTCGGCTTCAACTCCGACGGAATCTCCGGCGAGTGCTTTGATCTCACTTCCGACTCCACTCATCAATCACTCAACCTCCCTCCTCCTTTCGGCATATTTGAAGCACTCAATCGAAACAACACTCCTCTAGATTGGAACACGAAGGGTTTAGAAAGCAGCAACGGAGAGGATAACTACAACATGCTATTGAGCAGTAACCACCAAAACCAGCCAAAGCTCGAGAACTTTCTCGACCACCACTCTTTTAGCGGTGACCATGGCACATACAACTCGGCTTCTTCACTAAAACTTCCACCTCAGCCGTCGGAAGAACCACCGCCATCCTGCGACGGTGGTAGAAGTCCGAAAAACAGCAACTCTATCGGGCTTTCCATGATAAAGACATGGTTGAGAAACCAACCGTCACAGCATAGGTGGACGGGTAGATATGAAGCTCACCTTTGGGATAATAGTTGTAGAAGAGAAGGCCAAACTCGCAAAGGAAGGCAAGTTTATTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGATCATACGATTTAGCTGCACTCAAGTACTGGGGAACAACAACGACTACAAATTTTCCGGTTAGCCACTATGAAAAAGAATTAGAAGAAATGAAGCACATGACTAGGCAAGAGTACGTCGCGTCATTGAGAAGGAAGAGCAGTGGGTTTTCTCGCGGTGCTTCTATTTATCGTGGTGTAACGAGGCATCACCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACCCAAGAAGAGGCAGCAGAGGCATATGATATTGCAGCCATCAAATTCCGAGGACTGAAAGCTGTAACAAACTTCGACATGAGCAGATACGACGTTAGGAGCATACTTGAGAGCAGCACATTACCCATTGGTGGTGCTGCAAAACGTTTGAAAGATGTTGACACCCTGGATATTGGTCAAAGTCAAACCTCCCAAGTGGATTCCACCATCATCACCACCTCCCATCTAATTTATGCACCACCTGCAACCCATCACCATGCTTGGCCTTCTCTTTCATTCCATCAACCCCAACCTTTCTTGAATAATTACCCTTCTTATGGTGGGCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATTTTTCTCAAACCTTTCAAGATATCCATCACCACCAACAACTCCAATTAGGAAACACCCACAATTTCTTTCACTCCAATTCTGGCTTGCAAGGTGTCATTAACATGGATTCTGCTGCTTCCATGGATAACAATAGCTATGATGGAAACGGTTACGTGATTCCCATGGCTACTTCTACTTTCTTTGGGGATGATGGGAACCAAAATCATAGAAGCAACGGGTTTGATGATAATGATGTAAAGACGCTTGGTTATGAAAATGTGTTGAGCTCTAGTACTGATCCTTATCATGCAAGGAACTTGTATTATCTCTCTCAGCAAACATCTGCAGATGCATGCAATAATACTTGGGTGCCAACTGCTATTCCTACTCTCCCACCAAGGCATGCCAATAATATGACTTCATCACCCTTCACATTATTGCATGAATAG 1668 0.449 MASMNWLGFSLSPQQPNEDNNHSQTVAPRLGFNSDGISGECFDLTSDSTHQSLNLPPPFGIFEALNRNNTPLDWNTKGLESSNGEDNYNMLLSSNHQNQPKLENFLDHHSFSGDHGTYNSASSLKLPPQPSEEPPPSCDGGRSPKNSNSIGLSMIKTWLRNQPSQHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARSYDLAALKYWGTTTTTNFPVSHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLKAVTNFDMSRYDVRSILESSTLPIGGAAKRLKDVDTLDIGQSQTSQVDSTIITTSHLIYAPPATHHHAWPSLSFHQPQPFLNNYPSYGGQKLWCKQEQDSDFSQTFQDIHHHQQLQLGNTHNFFHSNSGLQGVINMDSAASMDNNSYDGNGYVIPMATSTFFGDDGNQNHRSNGFDDNDVKTLGYENVLSSSTDPYHARNLYYLSQQTSADACNNTWVPTAIPTLPPRHANNMTSSPFTLLHE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00081 555 SMART rav1_2 261 325 IPR001471 GO:0003700|GO:0006355
Sebi272g00081 555 SMART rav1_2 165 231 IPR001471 GO:0003700|GO:0006355
Sebi272g00081 555 FunFam AP2-like ethylene-responsive transcription factor ANT 161 227 - -
Sebi272g00081 555 SUPERFAMILY DNA-binding domain 260 321 IPR016177 GO:0003677
Sebi272g00081 555 FunFam AP2-like ethylene-responsive transcription factor 260 321 - -
Sebi272g00081 555 ProSiteProfiles AP2/ERF domain profile. 261 319 IPR001471 GO:0003700|GO:0006355
Sebi272g00081 555 CDD AP2 260 321 IPR001471 GO:0003700|GO:0006355
Sebi272g00081 555 MobiDBLite consensus disorder prediction 113 127 - -
Sebi272g00081 555 ProSiteProfiles AP2/ERF domain profile. 158 225 IPR001471 GO:0003700|GO:0006355
Sebi272g00081 555 MobiDBLite consensus disorder prediction 106 146 - -
Sebi272g00081 555 Pfam AP2 domain 261 311 IPR001471 GO:0003700|GO:0006355
Sebi272g00081 555 Pfam AP2 domain 164 217 IPR001471 GO:0003700|GO:0006355
Sebi272g00081 555 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 94 407 - -
Sebi272g00081 555 SUPERFAMILY DNA-binding domain 165 227 IPR016177 GO:0003677
Sebi272g00081 555 Gene3D AP2/ERF domain 261 321 IPR036955 GO:0003700|GO:0006355
Sebi272g00081 555 Gene3D AP2/ERF domain 163 227 IPR036955 GO:0003700|GO:0006355
Sebi272g00081 555 MobiDBLite consensus disorder prediction 1 30 - -
Sebi272g00081 555 CDD AP2 165 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00081 Sebi-Chr272 1186086 1189554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00081 156 347 AP2-EREBP Transcription Factor Family AT5G17430 86.979 5.00e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Sebi272g00081 AP2 3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00081 K09285 - gmx:100797584 536.184