Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00076 ATGAGGTTATTGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACGTCTTTCGCACTGAAGAGGGTAGAAGACAATGAGAAACAAAATGATAAAAATATGACCAGTTGTTCAGCCTCTACAAGTGCGTCTGAATCACAGTCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGATACTACAAAGGTTGCTAGATCCCTTCGACGAAGACCATGGATTAACTATGGGCGGTATGAGAACAGTTCAGAGGAAGACTCTGATTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACCTTGTCTTCCTAAGGGAGTCATACGTGGATGTCCAGATTGCAATAATTGCCAAAAGGTTGTTGCCAGATGGCAACCAGAAGATGCTCTTAGGCCAAATCTTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCGCCAGAGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTAGAAAGATGTCAAGGATTCAAAGTAATATGAAAAGGAAAAGGAAAAGTTGCACTAGAATGGGAGTGGATAATGGCACTAGAACAGGACCTAATGCGGTATTTTGTGAAGCTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGATGATTTTAAGGCCAAATACTTTAGAAATGAGAATGTATCTCATTTGAGTGCTAATACAACAATTTTAAATGGAACCTCGGAGCCTTCTGTGGAGAACATTGAGGGTGAATATTGGCGGATGGTCGAGAATCCAACTGAAGAAATTGAGGTGCTTTACGGAGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGCAAGTTTAGTCATGTTGGTTCTGCTTCACATGAACATTCCATGGTTGTATATAGGAATGTGCTTTTCCTCTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCTAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCACCCTCTATTCTTAAGTCTAAAGGAGTACCAGTCTATAGGTGTGTCCAAAACCCTGGGGAATTTGTTTTGACATTTCCTCGAGCCTACCACTCTGGATTCAATTGCGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAAGACTTCCATATCCCATGATAAGCTGTTGCTTGGGGCTGCTAGGGAAGCTGTACGAGCCCAATGGGAGCTTAATTTGCTGAAGAAAAATACTACGGGTAATCTACAATGGAAAGATGTTTGTGGAAAGGATGGTCTTCTGGCAAAAGCACTCAAGACACGTGTTGACATGGAGCGAGTAAGAAGGGAATTTCTCTGCAGTTCTTCACAGGCATTAAAAATGGAGAGTGGTTTTGACGCTACAAGTGAAAGAGAATGCAACATTTGCTTTTTTGATTTACATCTATCTGCTGCTGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCGAAGCAAATTTGTTCATGCTCTTGGAATTCCAAATTTTTCCTCTTTCGTTATGATATTAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGCGCAATATACAGATGGGCAAAATTGGATCTTGGGCTGGCACTAACATCTTATGTCTCAGCAGATAAGGAAAAAGTACTTAAGGAGTTGAAATTGCATTCATCCAACTTGTCTCATTCTTCCAGGGCCAATTTAATAGATGTTCCAATAGAGGATCAAGCAAATTCAGCAAATAGCGTAGATATAAGCTATCTTCAACAAAGGAAATCAACGGAAGCAGGGTCTCCTTTGAATCACATGAAAGAATTGTTAACATTCAATAGCTCAAAGCCTACATGTGAGATGGCTAATCATAAGATCTGTGTTAATAAAGAAGAACCTGTTATTTGCAGATCAAAGCCGAGAACCTCTGGTTGTCAATTGTCTCAAGAGGATTCATCATATGCTTTATCTCAGCCTCTAGCTCAGCATGGAGATGCTGTTGTGATGGGTAAAAAGGACACTATTACATTGCCTCGTGAAGATAACAGTTTGGATTCAACTCAGCTTTTGCATGTGAAACAAGAATGTCATGAACAAAGAGGACCAGTTCTAGCTTCTACACCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTGCAGAATCAGTTAGAAATATTCCAGCTTCTTCGACAGTAGAGACCAGTGATCATCGTTCGGAAAGTTTAGATATTTGTCCTCTAAAGCCACAACATTCTGGCACTAGCAAAGTTAAGAATGAGGATAATCATGAAAAGTTTGGAGGATGTACCACTTCAAATGTAGCAGACGGTGCAAGAGCTGTTAATGGAAACATCTCTTGCAGTCTAAATAATTACCGTCACAAAGGTCCTCGTATTGCAAAGGTGGTCCGGCGTATCAACTGCAATGTTGAACCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAGCAGTCAGGCTATATATCCAAAGGGTTTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCAAGTATGTGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGCTGGCCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAATGAGGTCTTCATTCATATGTCAGCTACAAGATGCTGGGAGCTGGTAAGGGAGAGAGTGAATCAAGAGATCGCAAAGCAACATAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTGGATCAAAGTCGAGTTTGTAATGAATATTGGGACTCCCGGCCCTACTCCCGGCCTCAAGGGCAGATTTCACAAGCTTACCAACAAACCAATGTAAATGGTGGAAATGGTCAAGGGGCTCTCATGAATCAGCACACGCCCGTTGGGGTTGTTGCAGTACTAAGGAGCCTATTTAAAAAGGTCAATGCAGAAGAATTGAAGTCATTGTACAGCATTCTTAGTGACAATAAGCTAGCGGCTGACCGGATCCTAATTGCGCAACTTCTAAATGAAGAGATTCACAAATCCCAACCGCCCTAG 3402 0.4165 MRLLMGTELMRICVKEDNDDFPSVPPGFESYTSFALKRVEDNEKQNDKNMTSCSASTSASESQSTQVENDVQVRDTTKVARSLRRRPWINYGRYENSSEEDSDCERLDQNFSSRPCLPKGVIRGCPDCNNCQKVVARWQPEDALRPNLEDAPVFYPTEEEFQDTLKYISSIRARAEPYGICRIVPPSSWKPPCPLKEKSRKMSRIQSNMKRKRKSCTRMGVDNGTRTGPNAVFCEAERFGFEPGPEFTLETFQRYADDFKAKYFRNENVSHLSANTTILNGTSEPSVENIEGEYWRMVENPTEEIEVLYGGADLETGVFGSGFPSKFSHVGSASHEHSMVVYRNVLFLFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTTGNLQWKDVCGKDGLLAKALKTRVDMERVRREFLCSSSQALKMESGFDATSERECNICFFDLHLSAAGCRCSPDRYACLDHAKQICSCSWNSKFFLFRYDISELNILVEALEGKLSAIYRWAKLDLGLALTSYVSADKEKVLKELKLHSSNLSHSSRANLIDVPIEDQANSANSVDISYLQQRKSTEAGSPLNHMKELLTFNSSKPTCEMANHKICVNKEEPVICRSKPRTSGCQLSQEDSSYALSQPLAQHGDAVVMGKKDTITLPREDNSLDSTQLLHVKQECHEQRGPVLASTPVDLSFHIGLTSAESVRNIPASSTVETSDHRSESLDICPLKPQHSGTSKVKNEDNHEKFGGCTTSNVADGARAVNGNISCSLNNYRHKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIYPKGFRSRVRYINVLDPSSMCYYISEILDAGRGWPLFMVSLENCPNEVFIHMSATRCWELVRERVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDQSRVCNEYWDSRPYSRPQGQISQAYQQTNVNGGNGQGALMNQHTPVGVVAVLRSLFKKVNAEELKSLYSILSDNKLAADRILIAQLLNEEIHKSQPP 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00076 1133 Gene3D Cupin 136 339 - -
Sebi272g00076 1133 SMART JmjN_1 150 191 IPR003349 -
Sebi272g00076 1133 PANTHER LYSINE-SPECIFIC DEMETHYLASE 146 1007 - -
Sebi272g00076 1133 SMART fyrc_3 962 1056 IPR003889 GO:0005634
Sebi272g00076 1133 MobiDBLite consensus disorder prediction 827 857 - -
Sebi272g00076 1133 SMART fyrn_3 912 956 IPR003888 GO:0005634
Sebi272g00076 1133 ProSiteProfiles FYR domain FYRN motif profile. 898 956 IPR003888 GO:0005634
Sebi272g00076 1133 Pfam F/Y-rich N-terminus 911 953 IPR003888 GO:0005634
Sebi272g00076 1133 Coils Coil 195 215 - -
Sebi272g00076 1133 ProSiteProfiles FYR domain FYRC motif profile. 958 1048 IPR003889 GO:0005634
Sebi272g00076 1133 FunFam Putative lysine-specific demethylase JMJ16 904 1042 - -
Sebi272g00076 1133 Gene3D - 905 1042 - -
Sebi272g00076 1133 Gene3D Cupin 340 478 - -
Sebi272g00076 1133 MobiDBLite consensus disorder prediction 48 73 - -
Sebi272g00076 1133 MobiDBLite consensus disorder prediction 43 74 - -
Sebi272g00076 1133 Pfam jmjN domain 152 185 IPR003349 -
Sebi272g00076 1133 ProSiteProfiles JmjC domain profile. 303 472 IPR003347 -
Sebi272g00076 1133 Pfam C5HC2 zinc finger 562 612 IPR004198 -
Sebi272g00076 1133 Pfam F/Y rich C-terminus 961 1044 IPR003889 GO:0005634
Sebi272g00076 1133 ProSiteProfiles JmjN domain profile. 151 192 IPR003349 -
Sebi272g00076 1133 MobiDBLite consensus disorder prediction 201 221 - -
Sebi272g00076 1133 Pfam JmjC domain, hydroxylase 349 455 IPR003347 -
Sebi272g00076 1133 SUPERFAMILY Clavaminate synthase-like 327 499 - -
Sebi272g00076 1133 SMART cupin_9 308 472 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00076 Sebi-Chr272 1062539 1071359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00076 5 1128 JUMONJI Transcription Factor Family AT1G08620 52.496 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi272g00076 JmjC 1.4e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00076 K11446 - gmx:100800271 1850.48