Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00061 ATGGGTTCGGGAAACAGAACCTACTCTGTTAATCCCGCCGATTACAAGCTTCTAGAAGAAGTCGGTTACGGCGCCAGCGCCACCGTGTACCGCGCAATCTTCCTTCCTCACAACGAAGAGGTGGCGGTGAAGTGCCTCGATCTGGATCGCTGCAACGCCAATTTGGATGACATAAGGAAGGAAGCACAGCTTATGAGCTTGATCGACCACAAGAACCTCGTTAGGTCCTTCTGTTCCTTCGTTGTTCAACAAAAGCTTTGGGTTGTTATGCCTTTCATGGCGCAGGGTTCTTGCTTGCACCTCATGAAGGCTGCTTATCCTGATGGATTCGAAGAAGACGCCATCGGATCCATCCTCAAGGAAACTCTCAAAGCGTTGGAGTATCTCCATCGACACGGTCACATTCATCGCGATGTTAAGGCTGGTAATATTTTGCTCGATTCCAACGGCGAAGTCAAACTCGCTGACTTCGGTGTTTCCGCTTCCATGTTTGATACCGGCGATCGTCAGCGTTCTAGAAACACTTTCGTCGGAACTCCTTGCTGGATGGCGCCTGAGGTACTGCAACCTGGAACTGGTTATAATTTCAAGGCTGATGTTTGGTCTTTTGGAATTACGGCACTGGAGTTGGCTCATGGTCATGCTCCTTTCTCCAAATACCCTCCTATGAAGGTTTTGCTAATGACCATACAGAATGCCCCTCCAGGACTTGATTATGATCGTGATAGAAAGTTCTCCAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAGAGGCCAACTGTGGAGAAGTTACTGAAACACTCTTTCTTCAAACAAGCCAAGCCTCCAGAGCTTTCTGTAAAGAAATTATTTGCTGATTTACCACCTCTTTGGAATCGTGTGAAAACTCTCCAGATTAAAGATGCAGCTCAACTAGCACTAAAGAAAATGCCTTCTGCAGAACAAGAAGCAATATCTCAGAGTGAATATCAGCGAGGAGTCAGTGCGTGGAACTTTGATATTGATGACTTGAAAGCTCAAGCTTCATTGATGCAAGACGACGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAATTCTTCAGCTCTTACAAGGATACAACAGATTCCCAATTTAGTGTGGGCAAAAAGGATTCAGATAACTTACAACAAGATGAGTTCACATTACAAGATGGTGGTAATGACATACCTCAAAGTGAGAAGAGAAATGGATCAATTGCTGAAGCAACACCATCTACCTTAGAGAAGGATATGGGAACAAGCAAGGTTAAAAATCAATCATTGAAAATTGGTAAAACCCAAAGTGGGCCGCTGGTGCCGGGCACAGTGCTTGGTCATTCTTTTCAAGAAAGAGGGCGCACATTTGAAAGGTTTGAGAATGAAAATCAGTCATTAGGTGAGAAAAGTAATCGTGATATGCGACGAGCTCCAAGCTTTAGTGGTCCATTAATGCTTCCAAACCGAGCATCGGCAAATAGTTTATCAGCTCCAATAAAATCTTCTGGAGGATTCAGAGATTCCTCAGATGACAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGACGGTTCTCAGTGACATCAGAAAATTTAGATCTGGTGAAGGATATCCCAGTAAGTTCAGTTTCACGCCGATCTTCACAGGGATCACCACTAAGGAAATCTGCCAGTGTTGGTGATTGGATGTTGGATTTCAAACAAATGTCAATTGGACAGTCCACCAATGATTCTGCCAATATCAATATTCCTGCATCACTTCTTGTGCCTCACCTTCATAATATTTTGCAGCAGACATCTATTCAACAGGATCTTATAATGAACCTTTTGAATAGCTTGCAAAATGCTGAGGCAATTGATACTTCTCAGAATGGAAAATTGCCACCATTACCTCGCAGTTCGGAGTACAATGGAAGTGTTGATACAGGTGCTTCAGAGAGGGAGCATCTTCTGCTGGCCAGAATTTCAGAACTTCAGTCTCGGATGATCAGTTTGACCGATGAACTGACTTCTGAGAAGTTGAAATACATGCAGTTGCAACAACAGCTAGCTGCTGCTCTCTACAGTCAGGAACAAAATGGGGAAAGAGAGGAAGTTGCATGA 2118 0.4367 MGSGNRTYSVNPADYKLLEEVGYGASATVYRAIFLPHNEEVAVKCLDLDRCNANLDDIRKEAQLMSLIDHKNLVRSFCSFVVQQKLWVVMPFMAQGSCLHLMKAAYPDGFEEDAIGSILKETLKALEYLHRHGHIHRDVKAGNILLDSNGEVKLADFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADVWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDRKFSKSFKEMVAMCLVKDQTKRPTVEKLLKHSFFKQAKPPELSVKKLFADLPPLWNRVKTLQIKDAAQLALKKMPSAEQEAISQSEYQRGVSAWNFDIDDLKAQASLMQDDDDIAEMREEDENKFFSSYKDTTDSQFSVGKKDSDNLQQDEFTLQDGGNDIPQSEKRNGSIAEATPSTLEKDMGTSKVKNQSLKIGKTQSGPLVPGTVLGHSFQERGRTFERFENENQSLGEKSNRDMRRAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSSDDKSKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSSQGSPLRKSASVGDWMLDFKQMSIGQSTNDSANINIPASLLVPHLHNILQQTSIQQDLIMNLLNSLQNAEAIDTSQNGKLPPLPRSSEYNGSVDTGASEREHLLLARISELQSRMISLTDELTSEKLKYMQLQQQLAAALYSQEQNGEREEVA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00061 705 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Sebi272g00061 705 Coils Coil 667 687 - -
Sebi272g00061 705 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi272g00061 705 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 96 326 - -
Sebi272g00061 705 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi272g00061 705 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi272g00061 705 MobiDBLite consensus disorder prediction 376 428 - -
Sebi272g00061 705 MobiDBLite consensus disorder prediction 626 646 - -
Sebi272g00061 705 MobiDBLite consensus disorder prediction 492 509 - -
Sebi272g00061 705 CDD STKc_OSR1_SPAK 14 276 - -
Sebi272g00061 705 MobiDBLite consensus disorder prediction 488 518 - -
Sebi272g00061 705 MobiDBLite consensus disorder prediction 392 428 - -
Sebi272g00061 705 Gene3D Transferase(Phosphotransferase) domain 1 96 327 - -
Sebi272g00061 705 SUPERFAMILY Protein kinase-like (PK-like) 14 331 IPR011009 -
Sebi272g00061 705 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Sebi272g00061 705 FunFam Serine/threonine-protein kinase BLUS1 4 92 - -
Sebi272g00061 705 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 678 IPR047173 GO:0043539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00061 Sebi-Chr272 816507 823460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00061 8 688 MAP Kinase Kinase Kinase Kinase AT4G10730 65.893 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Sebi272g00061 Pkinase 1.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00061 - - gmx:100811264 1240.33