Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00057 ATGGCAATGGCAATGACAATGCCTCTTACTCTAAGGAATAAGCTCAAGACTCTTTGTTCTTGTGGAGATGGCTGGTCTTATGCCATTTCTGGCGTTTTCATCCCCGGAATTCCCTGCAAGCACAGTTGGGTGCACTCAGATAGTCAAATCCAAGAATGGAATTTGACTGGGCAGAATATTTGTGAGAATGACTCTGGATTGCATCAACAATTCTCCTCTGGGATAAAGACAATTGTGGTCATACCTGTCAAAGCATGGGGAGTGGTGCAATTTGGATCTAAAAAGAAGATTTTGGAGAGAGTGGACTTTTTGGAGCAAACACAAAGCTTGCTCATGGAGATAGATGATACAAATATGCCTGACATGTCAGGAAATGCAGTTTTATCTTTGAACTGTGAAGATTATGATCTAAATGGGTTGTTGGCTTCCATTTCTTCCGAAAATTCAGATGATTGGAATCTCAAATATGCTCATGATGAACACTCTAAAGAGCTCAGAAAAGTTTTTCTTCTGAAAGTTTCAATGATCCTTTCCCTTCTCAATTTGAGACTTATGAAGAAGGGGAAAAGACTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGACGGGTGAATCAAATAATAACCCTTTCAATAGTTCTGATTTTGAGCATGTGTTATCATCCAATAAGAGGCAAATGGTAGAGTTTTCACCAATGAATAGAAATAGAAGTCCAATACATTTTGCAAACCTTGATAGGCCTGAGGCTAGAGCAAACTTGATGCAGCCTGTTTCTGACTTGGACAAGTCAAACACTCTTTTAAGCAAGAAAGATACATTCCCAAAATTCCAAGTAGGCATGTTGATTGATGATAGGAATAGCATTAATATTGGGAAGGCTGTTCCAGCACACCCTCAAAAGCCAGAGGAGCCCACAAAACCCACCAAGAAGAGGGCTAGGCCAGGGGAGAGTACTAGACCACGACCAAAAGATCGCCAGCAGATCCAAGACTGTATTAAGGAGTTGAGAGGAATCATCCCCAATGGTGGAAAGTGCAGCATTGATTCTTTGTTAGACCGCACCATCAAATACATGCTTTTCTTAAGAAGTGTTGTCAAGTATGCAGACAATCTAAAGGAACCTAATGAGCCAAAGCTCATTGACCAAGAAAATGGAGTGGTTCTAAAAGACAATAGAGTGGGAGATAACAAAAACTGTGGTGTTACATGGGCATTTGAAGTGGCACAACAAACAACTGTATGCCCAATTATAGTTGAGGACATGAGCACACCTGGACAAATGCTTATAGAGATGCTTTGTGAGGAGCAGGGTTTCTTCCTTGAGATAGTTGACATTATTCGCGGTTTTGGGCTGAATATCTTGAAAGCAAAGATGGAATTAAGAAAGAACAAACTATGGTCACGCTTTATTGTTGAGGCCAACAGACATGTGACAAGGATAGATGTATTTTGGTCCCTTATCCATCTTCTGCAGCAAACAAACACCTCAGGAGTTGATTCTGCTAATAAGCAGTGCAATGTTATTGATGCCAATATTTCTTAA 1542 0.4027 MAMAMTMPLTLRNKLKTLCSCGDGWSYAISGVFIPGIPCKHSWVHSDSQIQEWNLTGQNICENDSGLHQQFSSGIKTIVVIPVKAWGVVQFGSKKKILERVDFLEQTQSLLMEIDDTNMPDMSGNAVLSLNCEDYDLNGLLASISSENSDDWNLKYAHDEHSKELRKVFLLKVSMILSLLNLRLMKKGKRLFSELGIEELLTGESNNNPFNSSDFEHVLSSNKRQMVEFSPMNRNRSPIHFANLDRPEARANLMQPVSDLDKSNTLLSKKDTFPKFQVGMLIDDRNSINIGKAVPAHPQKPEEPTKPTKKRARPGESTRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDRTIKYMLFLRSVVKYADNLKEPNEPKLIDQENGVVLKDNRVGDNKNCGVTWAFEVAQQTTVCPIIVEDMSTPGQMLIEMLCEEQGFFLEIVDIIRGFGLNILKAKMELRKNKLWSRFIVEANRHVTRIDVFWSLIHLLQQTNTSGVDSANKQCNVIDANIS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00057 513 MobiDBLite consensus disorder prediction 302 327 - -
Sebi272g00057 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 368 IPR036638 GO:0046983
Sebi272g00057 513 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 40 116 IPR043561 GO:0003700|GO:0006355
Sebi272g00057 513 MobiDBLite consensus disorder prediction 291 327 - -
Sebi272g00057 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Sebi272g00057 513 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 40 110 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00057 Sebi-Chr272 788982 793495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00057 303 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.500 3.10e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00057 - - cam:101509177 482.641