Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00049 ATGGCAACCAGAAGATATGCGTTTGGAAGGTTGGATGAGGCTAACCATCCAGACTCCATGAGAGCCACCTTAGCTGAATTTGTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTCTGCGCAAGATTTACATGGAGCCAGGTGCATCAGCAGGTGAGCTAGTGGTGATTGCACTAGCTCATGCTTTTGCTCTATTTGCTGCTATATCTGCTAGCATGCATGTATCAGGTGGCCATGTCAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGTAGGATCTCTGTTGTCAGAGCCGTCTACTATTGGATTGCTCAACTTCTGGGTTCTATAGTGGCTGCTCTCTTATTGAGGCTTGTTAGTAACAACATGAGACCACAGGGGTTCAGTGTGACATTCGGTCTTGGTGCATTACACGGACTTATACTTGAGATTGCTATGACATTTGGTCTGATGTACACTGTGTATGCTACTGCTATTGATCCCAAAAGGGGTACCATTGGCACAATTGCACCCTTAGCTATTGGACTCGTTGTTGGGGCAAACATCCTCGTTGGTGGGCCGTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCCGTGGTGGGCTGGAGATGGCACTACCACTGGATCTTCTGGGTGGGTCCATTGATTGGGGCTGCCCTGGCAGCACTCATATATGAATACATTATGGTCCCAATTGAGCCTCCTCATACTCATCAACCTTTGGCTCCTGAAGATTACTAG 768 0.4883 MATRRYAFGRLDEANHPDSMRATLAEFVSTCIFVFAGEGSALALRKIYMEPGASAGELVVIALAHAFALFAAISASMHVSGGHVNPAVTFGALLGGRISVVRAVYYWIAQLLGSIVAALLLRLVSNNMRPQGFSVTFGLGALHGLILEIAMTFGLMYTVYATAIDPKRGTIGTIAPLAIGLVVGANILVGGPFDGACMNPARAFGPAVVGWRWHYHWIFWVGPLIGAALAALIYEYIMVPIEPPHTHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00049 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 FunFam Probable aquaporin TIP1-1 4 253 - -
Sebi272g00049 255 PANTHER AQUAPORIN-8 6 248 IPR034294 -
Sebi272g00049 255 SUPERFAMILY Aquaporin-like 14 245 IPR023271 -
Sebi272g00049 255 Gene3D Glycerol uptake facilitator protein. 4 242 IPR023271 -
Sebi272g00049 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi272g00049 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Sebi272g00049 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00049 Sebi-Chr272 680371 681445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00049 2 255 Major Intrinsic Protein MIP AT1G73190 69.697 1.06e-123 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00049 K09873 - gmx:100814469 442.58