Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00024 ATGAGAGCTCTGAACCTTGTGCATGTATACGATTGGTTCCTGATAGATTTGGTTCTGGTTCTATATAGTAAGTTGGTTGCTTGGGTCAAAGATTTTTCTGTCATGGCAACTAGACTTCAATTTGAGAATTTTTGTGAAGTTGGAGTCTTCTCTAAACTCACCAATGCCTATTGTTTGGTTGGTATTGGAGGCTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAAACCTCCATTGCTGGCACTCGTATTGTTGGTCGTCATTGTATTGGAAACAAGAACGGGCTTCTCTTGCCCCACACCACCACAGACCAAGATCTTAAACTTTTTGTCCCTCTTGTTGGAATTTATTTAAAAGATGAGAAGAGCTTCAAGGAAACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTGTTGCCGGTAATATTCTTGTTGGCAGTTACTGTGCCTTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATTGAGGACTTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTCAATCGTGGAAGTGAACTAATAGCTGCTGGCTTGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACTACAGCAACAGAGCTATCTGTGATTGAGAGTGTTTTCAAGCTGAGGGAAGCCCAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCGCTCATTGATAACTATTTGCGTTGCTCGGTGCTTCCCCCTCCATTCACCGCTTCCGCTTTGGTCCTCCGTCAAGATAGTAAGTTGGTTGCTTGGGTCAAAGATTTCTGTCATCTCTCTGTCATGGCAACTAGACTTCAATTTGAGAATTCTTGTGAAGTTGGAGTCTTCTCTAAACTCACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTTGTCAAAACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTATTGGAAACAAGAAAGGGCTTCTCTTGCCCCACACCACAACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCAGATCAAGTTGTTGTTCAGCGCATAGAAGAAAGATTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCACGTGGCCCTCACACACACTGATCTCGACAGGGAAACCGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTGTTGCTGGTAATATTCTTGTCGGCAGTTACTGTGCCTTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATTGAGGACTTGGATGAACTTTCTACACTTCTTCAAGTTCCTTTGGTTGCTGGGACTGTCAATCGTGGTAGTGAAGTAATAGCTGCTGGTTTGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCTGTGATTGAGAGTGTTTTCAAGCTGAGGGAAGCCCAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCGCTCATTGATAGCTATGTCTGA 1605 0.4405 MRALNLVHVYDWFLIDLVLVLYSKLVAWVKDFSVMATRLQFENFCEVGVFSKLTNAYCLVGIGGSENFYSAFEAELADVIPVVKTSIAGTRIVGRHCIGNKNGLLLPHTTTDQDLKLFVPLVGIYLKDEKSFKETEEMIADVLGVEVFRQTVAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSELIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDNYLRCSVLPPPFTASALVLRQDSKLVAWVKDFCHLSVMATRLQFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVGRLCIGNKKGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTVAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00024 534 Hamap Translation initiation factor 6 [eif6]. 279 534 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 Gene3D - 124 235 - -
Sebi272g00024 534 Gene3D - 290 514 - -
Sebi272g00024 534 Hamap Translation initiation factor 6 [eif6]. 24 255 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 SUPERFAMILY Pentein 35 234 - -
Sebi272g00024 534 SUPERFAMILY Pentein 290 513 - -
Sebi272g00024 534 SMART eIF6neu2 292 493 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 SMART eIF6neu2 37 214 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 FunFam Eukaryotic translation initiation factor 6 290 514 - -
Sebi272g00024 534 Gene3D - 32 120 - -
Sebi272g00024 534 CDD IF6 36 233 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 Pfam eIF-6 family 133 213 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 Pfam eIF-6 family 293 492 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 Pfam eIF-6 family 38 117 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 290 533 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 CDD IF6 291 512 IPR002769 GO:0042256|GO:0043022
Sebi272g00024 534 NCBIfam translation initiation factor IF-6 293 513 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00024 Sebi-Chr272 166944 175003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00024 290 534 Eukaryotic Initiation Factors Gene Family AT3G55620 90.204 5.21e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00024 K03264 - tut:107362863 585.489