Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00015 ATGGCCACCAGGCGTTTGAGGGCATTCAAACGGTGGATGAAGTCTCATGGATTCGAATGGAGCGATGCACTGGAGTTTGTGGACACCCCAGAAGAGGGAATAGCTGTGAGAGCTCTGTGTCAATTGAAGGAAGGTGATGTTGTGGCCAAGATGCCAAAGGAAGCTTGCCTTACCACCAAGACTAGTGGGGCACGTGATATCATTGAAGATGCTGGTTTGGGTGGTCAACTGGGGCTAGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGGAGACTCCCCATGGGCTGGCTACCTTCAGCTATTGCCTCACCAAGAGTGCTTGCCTATTGTTTGGACCCTCAATGAAGTAAACGACCTTTTGTGTGGTACTGAACTTCACCAGACAGTGCAAGAAGACAAAGCTCTTATCTATGAGGACTGGAAGGAGAGTATTCTTCCCCTGTTGGATTCAGAACCTTCAAAGCTTAACCCAGAGTTTTTTGGCGTAGAACAATATTTTGCAGCCAAAAGTGTTATTCTTTCACGTTCTTTCGAGATAGATGATTACCATGGTTCTGGCATGGTTCCTCTGGCAGATCTGGCAAGAAAAGGATATCGAAGTGGAAAACTATTCAATCATAAAACAGGTGCAGAAGATGTGCATTTCACGGCTATGCCCTCTAATTATGAATCTGACAATGATGCCAATAGTTCTGAAGAGGGCATTGTTGATGACGAAGCATTGGCTCAAAATTCCTCCATAGTTATGACAGAGTCGAATACTGCAAGTGTTGAGAACTGCATTGTTAGTGACTTGGAGAGTTCTTCAGTTACTGAGGGGGATCCTTCAATGCTAGAGATGATTGTGATAAAAGATGTCAGAAGTGGAGCTGAGGTATTTAATACTTACGGGTTATTGGGTAATGCTGCTTTGCTTTATAGATATGGATTTACTGAGCAAGACAATTCCTATGATATTGTTAACATTGATTTGGAACTGGTACTGCAATGGTGTTCTTCTTTGTTTTCTGACCGCCACAGTAGAGCAAGAATCTCCCTTTGGAGAAGATTAGGCTATTCTGCATGGGGCTACCAAAACTCTGAATATTTTGAGATCTCATTTGATGGAGAACCACAGATTGAACTCCTCATTTTATTATACATCATGTTATTACCAGATAAAGCCTATGATAAGTTAGACCTATCACTATCAATTGCTGGAAAATGTCATGAATCAAGTGAAACTACTCTTTTGAATGATAATATATTTCTAAAGAAAGCATCTGATATGAGCAAGAAATCCTTGATGACTAAAGAAGTTTGTGATGCTCTGTTGTCACTCGCTGATATGAGGGAGAGTCTCTATGGTTTGGAATCAATAGAAGATGATATTGAGGCATTGGGAAGGTGTAGTTTAGTTAGAGAGAAGAAGCTGTATCATTCTTTGGTGCTGCGCATCAGTGAAAGGAAGATCCTTCAAAAACTCAGAAATTATGCTTCCTTTAAAATCACTAATCATAGTTCTGCGAGGAAGAAGTTGAAAAGGACAACAAAGAAAGAGAGTTGA 1548 0.4128 MATRRLRAFKRWMKSHGFEWSDALEFVDTPEEGIAVRALCQLKEGDVVAKMPKEACLTTKTSGARDIIEDAGLGGQLGLAFAIMYERSLGGDSPWAGYLQLLPHQECLPIVWTLNEVNDLLCGTELHQTVQEDKALIYEDWKESILPLLDSEPSKLNPEFFGVEQYFAAKSVILSRSFEIDDYHGSGMVPLADLARKGYRSGKLFNHKTGAEDVHFTAMPSNYESDNDANSSEEGIVDDEALAQNSSIVMTESNTASVENCIVSDLESSSVTEGDPSMLEMIVIKDVRSGAEVFNTYGLLGNAALLYRYGFTEQDNSYDIVNIDLELVLQWCSSLFSDRHSRARISLWRRLGYSAWGYQNSEYFEISFDGEPQIELLILLYIMLLPDKAYDKLDLSLSIAGKCHESSETTLLNDNIFLKKASDMSKKSLMTKEVCDALLSLADMRESLYGLESIEDDIEALGRCSLVREKKLYHSLVLRISERKILQKLRNYASFKITNHSSARKKLKRTTKKES 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00015 515 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 461 - -
Sebi272g00015 515 ProSiteProfiles SET domain profile. 22 298 IPR001214 GO:0005515
Sebi272g00015 515 SUPERFAMILY SET domain 4 317 IPR046341 -
Sebi272g00015 515 Pfam SET domain 33 298 IPR001214 GO:0005515
Sebi272g00015 515 Gene3D set domain protein methyltransferase, domain 1 250 312 - -
Sebi272g00015 515 Gene3D set domain protein methyltransferase, domain 1 4 233 - -
Sebi272g00015 515 CDD SET_LSMT 23 312 - -
Sebi272g00015 515 PIRSF RMS1_SET 1 497 IPR011383 GO:0016279|GO:0018026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00015 Sebi-Chr272 101307 105077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00015 1 513 NAC Transcription Factor Family AT3G56570 54.296 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi272g00015 SET 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00015 - K05302 gmx:100794971 793.112