Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00006 ATGGTCGTGAACGGAGGAAAGCCCTTGAAGCGCATGAAAAGGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTTCCCTCGCCGTCACTCGCCGCTTCGGAAAACTTCGCCGGCGGACCCTTCCGGTCCAACGTCCGCTCCTTCCTCACCAAGCACGCGCTGCTCCCGCCGCCATCGGCGCTCTTCCCCCACCTGTTGACGTGGCAGATCCTCTTCCGGATCGGAGATCTCACCGACGGCCCCGAATCGGGCCCGGCGGTGGTGTGTCTTGACGTCGTGGAGGAGGACGTGGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAAGCAGATGGGAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGTTGTGGAGATATCTTGCATTTGTCGGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACTGATGATGTTGAAGACTGGGTGTACCATCAATTAGAGAGCACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGCCACATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTACCGCTTGCTCCATGCCATTATGAAGGGACATCCGTGGTACGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCATATACGTCAGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCGTCTTCCACTCCCAGGAACAACAGCCCCATTCACGTGTGCAGGATATGATCTCATATTATCAGTCTTTGTCAGAGCATGAGCTTGTAAATATCAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTCGCAAGACTGCATCAAAGGTTGATGACATAACCTGCAAGAAGCGTCGTTTAAATGCTTCTGGACTATCAAGTTCTTGGGAGAAGAGTGATGTTGAACGTGTGGAGGAAGCCATGATCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCTGGCGTGCTCTTAGAGGTGCTGTTTGTAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGTCTTGGAGAATTGGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGGCTGCAACTGGCTCGTGCTATGGAATTATAGCAAACAATAATTCTTCAGGGTCAAAGTATCCATCTGAAGATAATCTCCTCCAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGCTAAACTATGTTGAAGAAGGGACAAGGACTCTTGCAATGAGATCAGCTCAGAAGCTTCTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGATGTTTCCATTGTCAGATTTGTATAAAATACGCATCTCATGTCAGGTTGAACTTGTGGACGATTCTGAAGATTCTGCAGCTAGAATTCCACCAGAACTAGTTGTGCTGCCCATGAATGCCACAGTGTCTGACCTTAAAATTGAAGCAGCAAATGCTTTTCAAGATGTATATCTAATGTTTAGAAGATTTCAAGTTGATGAGCTACTTGGCCATGGCGGTGTAGATGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGAGGTGGTTGGTGTCCGAGGAAGATGCATTGGGAAGAACGGGTTGAGCAAGTTCCGAATGGAACGAGGACTTGAGAGGTGGACTGTAGAGTGCAGCTGTGGGGCTAGGGATGATGATGGGGAGAGAATGTTGGCTTGTGATACATGTGGAGTATGGCGGCATACTAGGTGTTCAGGCATTCAAGACATTGATCCTGTTCCAGCACGTTTTGTTTGTCCAAGATGCCAAAACTCTGACTCAAAGCCTAAATCTAGTGGGCTCTGTAAAGATGAGACTGTGACTAACGTTAGTGCTAGTGGTAGTTGCTTTGGAAACGGCTTGCCCAGTGCCTTCTGA 2127 0.4777 MVVNGGKPLKRMKRRVTADFYDFLTFPSPSLAASENFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRIGDLTDGPESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTQEAYTSAVESLSNLPLSVFHSQEQQPHSRVQDMISYYQSLSEHELVNIRDLFCFLMGLIHDARKTASKVDDITCKKRRLNASGLSSSWEKSDVERVEEAMIRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVYGGMVVNSRCNPQTGVYEFRLEAATGSCYGIIANNNSSGSKYPSEDNLLQCLRYLYDSLLHPQMMLNYVEEGTRTLAMRSAQKLLDCKQFVKDYSPEMFPLSDLYKIRISCQVELVDDSEDSAARIPPELVVLPMNATVSDLKIEAANAFQDVYLMFRRFQVDELLGHGGVDDSTQVKLLLGSKEVVGVRGRCIGKNGLSKFRMERGLERWTVECSCGARDDDGERMLACDTCGVWRHTRCSGIQDIDPVPARFVCPRCQNSDSKPKSSGLCKDETVTNVSASGSCFGNGLPSAF 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00006 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 679 IPR013083 -
Sebi272g00006 708 SMART PHD_3 627 673 IPR001965 -
Sebi272g00006 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 686 - -
Sebi272g00006 708 CDD PHD_MMD1_like 627 672 - -
Sebi272g00006 708 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Sebi272g00006 708 ProSiteProfiles Zinc finger PHD-type profile. 625 675 IPR019787 -
Sebi272g00006 708 Pfam PHD-finger 628 674 IPR019787 -
Sebi272g00006 708 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00006 Sebi-Chr272 27900 32220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00006 86 672 PHD Transcription Factor Family AT5G22260 30.781 6.86e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi272g00006 PHD 3.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00006 K26271 - gmx:100818189 1252.27