Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00004 ATGGGTTCAATTGCGAATAGCCAAGAAGCAATTGAACTCTTCCAAGGCCAAACTTTGCTGTACATGAACATGGCTGGCTTCCTAAAATCCATGTGTCTTAAATGGGCTGTCCAACAAGGCATTGCAGACATAATACACAACCATGCCAAACCCATCACTCTTCCTGATTTGGTGTCAACTCTTCAAGTTCCACCATCAAGGGCTAGTATTGTGCAAAGATTCATGCGCTTTCTAGCACACAATGGAATCTTTGCAATAATCCATGAGAGCAAAGAAGGTCATGAAGCATATGCTCTGACCCCAGCATCAAAGCTTCTAATTTCTAAGGCATGTAGTGGCCCTTGTTTATCTCCAATGGTTAAGATGGCTTGTGATCCAGTTCTGATGAATGCATACCACCACTTGGGGGACTGGATTTGTGGGGAAATCCCCACTTTATATGAGGCAGCCTTAGGAAAACCTTTTTGGGAATTTCTTGGGGAAAATCCTGCTTATATGAGTCTCTTCAATGAGGCAATGGCAGCGGATTCTCAAATGGTAGACTTGGCATTGAAAAATTGTAGTTCAGTCTTTGAGGGGCTTGATTCCATTGTGGATGTTGGTGGTGGAATTGGAACCACAGCTAAAATTATATGTGAGGCATTTCCTAAGTTGAAATGTGTTGTGTTTGACCTTCCTCAGGTTGTGGCTAACTTGTCAGGTAGCAATAATTTGAGTTATGTTGGTGGGGACATGTTCAAATTTATCCCTCAAGCTGATGCAATTCTACTAAAGTGGATTCTACATGATTATACGGATGAAATTTGCCTAACGATTCTGAAAAGCTGTAAAGATTCTCTTTCAAGGAATGACAAAAGAGGGAAAGTGATTATCATGGATATAGTTATAAATGAAAAGGAAGACGATCAAGATATGACTCAAACAAAGCTTTCTATGGATATAATCATGATGAATGTTAATGGAAAAGAGAGAACTGAAAAAGAATGGAAGCAACTCTTCATTGAGGCAGGGTTCAAACAATATAAAATATTTCCCTTCTTTGGCTTTAAATCTCTTATTGAACTCTATCCTTAG 1074 0.3948 MGSIANSQEAIELFQGQTLLYMNMAGFLKSMCLKWAVQQGIADIIHNHAKPITLPDLVSTLQVPPSRASIVQRFMRFLAHNGIFAIIHESKEGHEAYALTPASKLLISKACSGPCLSPMVKMACDPVLMNAYHHLGDWICGEIPTLYEAALGKPFWEFLGENPAYMSLFNEAMAADSQMVDLALKNCSSVFEGLDSIVDVGGGIGTTAKIICEAFPKLKCVVFDLPQVVANLSGSNNLSYVGGDMFKFIPQADAILLKWILHDYTDEICLTILKSCKDSLSRNDKRGKVIIMDIVINEKEDDQDMTQTKLSMDIIMMNVNGKERTEKEWKQLFIEAGFKQYKIFPFFGFKSLIELYP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00004 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 355 IPR029063 -
Sebi272g00004 357 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Sebi272g00004 357 FunFam O-methyltransferase ZRP4 111 357 - -
Sebi272g00004 357 PANTHER O-METHYLTRANSFERASE 17 342 IPR016461 GO:0008168
Sebi272g00004 357 PIRSF O-mtase 2 357 IPR016461 GO:0008168
Sebi272g00004 357 Gene3D Vaccinia Virus protein VP39 112 357 IPR029063 -
Sebi272g00004 357 Pfam O-methyltransferase domain 132 339 IPR001077 GO:0008171
Sebi272g00004 357 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Sebi272g00004 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 357 IPR016461 GO:0008168
Sebi272g00004 357 Gene3D - 2 106 IPR036388 -
Sebi272g00004 357 SUPERFAMILY "Winged helix" DNA-binding domain 12 108 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00004 Sebi-Chr272 19046 20332 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00004 1 355 Monolignol Biosynthesis Gene Families AT5G54160 34.426 1.20e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00004 K22588 - gmx:100818947 509.22