Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00001 ATGGATAGAAGATGGCACAGAGTTGGCAAGGGTGAAGGAGATGCTGGAATTTCCTGCTCTCACGGATTGAAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCTATTCCCCTCTATGGTTTTTCATTTGTCCCATTCATTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACCGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGTTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAGTAACACAGAATTCTATTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTTCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGACAATTTATCCGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGGCATTGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1539 0.3684 MDRRWHRVGKGEGDAGISCSHGLKGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFIEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMSLSDHASLTLEEEFLERGVYKSIADLKEVTQNSIFVTIGTVKDIESEYNWCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDFFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKDNLSVSCDNGVDTPSPLLPTGKTALNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKLRKVIKEEKN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00001 512 Gene3D - 231 394 IPR012340 -
Sebi272g00001 512 SUPERFAMILY Nucleic acid-binding proteins 237 374 IPR012340 -
Sebi272g00001 512 CDD RPA1_DBD_A_like 24 81 - -
Sebi272g00001 512 Gene3D - 13 87 IPR012340 -
Sebi272g00001 512 CDD RPA1_DBD_B_like 114 218 - -
Sebi272g00001 512 Gene3D - 88 225 IPR012340 -
Sebi272g00001 512 SUPERFAMILY Nucleic acid-binding proteins 25 87 IPR012340 -
Sebi272g00001 512 CDD RPA1_DBD_C 239 334 IPR047192 -
Sebi272g00001 512 PANTHER OS03G0429900 PROTEIN 149 383 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi272g00001 512 Pfam Replication factor-A C terminal domain 251 369 IPR013955 -
Sebi272g00001 512 Pfam Domain of unknown function DUF223 24 108 IPR003871 -
Sebi272g00001 512 SUPERFAMILY Nucleic acid-binding proteins 94 218 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00001 Sebi-Chr272 1204 5184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00001 25 334 Core DNA Replication Machinery Family AT2G06510 25.223 6.33e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00001 - - adu:107477146 397.897