Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi271g00007 ATGGAGAAAGACGGTCTTGGGCTTGAAATCACGGAACTAAGGTTGGGGCTTCCCGGTGGGGAAGTGGAAATAAAGAATAATAATGAGAAGCAGAAGAAGAGGGTGTTCTCGGAGATTGAGAATGATATTGATGAAAATAGCTCCTCGGAGGAGGATAAGAAAATAATGCAAGCGAAGAATCAAGTGGTAGGGTGGCCTCCAGTGTGTTCCTACCGGAAGAAGAATAGCATGAATGAAGCCTCCAAAATGTACGTCAAAGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGATTTGGGTATGCATAAGGGATACTCTCAGTTAGCCTTTGCCTTGGAGAAGCTCTTTGGTTGCTACGGAATCGGGGAGTCGTTAAAGGATGGAGACAATTCAGAACACGTTCCCATCTACGAGGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTCCCCTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTTGATCTGCAACCAAAAGGATCGTTAAAGGGATTTATAGAAGACAGCCGCCGCCGCTGTCCGGTGTCCGTCTCGTCGCCGCAGCTCCAGTCGCCGCACGTCGTCGCACCTCCTGCTGCAGCCATGTCGCACCTCGCAGCTGTTCGCAATCACCATCGCACCGTCACAGAGCCGCCGTTGTTCTGCTCCGCCTCCTTCCCCGTCGTACTCCGGCGGCTTTGCTGGAGATTGAAGCCCTCACCGTCGATCTCCGGTCATCAGAAGACATCAACCCTCACCAAGCGTCCAAGACTCCAAGGCTCTCTGAAGTCTCAAGTCCCCAACTGA 846 0.5095 MEKDGLGLEITELRLGLPGGEVEIKNNNEKQKKRVFSEIENDIDENSSSEEDKKIMQAKNQVVGWPPVCSYRKKNSMNEASKMYVKVSMDGAPFLRKIDLGMHKGYSQLAFALEKLFGCYGIGESLKDGDNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEDSRRRCPVSVSSPQLQSPHVVAPPAAAMSHLAAVRNHHRTVTEPPLFCSASFPVVLRRLCWRLKPSPSISGHQKTSTLTKRPRLQGSLKSQVPN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi271g00007 281 ProSiteProfiles PB1 domain profile. 82 170 IPR000270 GO:0005515
Sebi271g00007 281 Gene3D - 76 178 - -
Sebi271g00007 281 SUPERFAMILY CAD & PB1 domains 75 167 - -
Sebi271g00007 281 FunFam Auxin-responsive protein 77 178 - -
Sebi271g00007 281 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
Sebi271g00007 281 MobiDBLite consensus disorder prediction 255 281 - -
Sebi271g00007 281 Pfam AUX/IAA family 30 173 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi271g00007 Sebi-Chr271 352513 357706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi271g00007 80 172 B3 DNA Binding Superfamily AT4G23980 37.634 9.03e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sebi271g00007 AUX_IAA 2.1e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi271g00007 K14484 - gmx:100811879 299.286