Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi271g00006 ATGTCACCACCACAAAGTGGCATCATCCACTCTTCGGAATCTGACGCCGTGGACGGTAACTTGAAGGAAATCACTGAGCTCACCCTTGGCCTTCCCGGTACCAAAACTTCTGCAGCTGCAGGCACAAAACGTGGCTTCACTGACACCGTTGATCTCCATCTTGGCACCACTTCTGAAAATTCAGCAAATAACTGCTTGCGCTCCACCGCCAAATTCCCACCACCCAAGGCACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCGATGAAGAGTTGCAAGTACGTGAAGGTGGCGGTGGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAATGTATGAAAGTTATGAGCATCTGCTGAGGGCATTAGAGGCCATGTTTTGTTGCTTAACAATTCGTAATGATTCGATGAATGAGATGAAACTGATGGATACTGGGAATGGGATTGAATACATGCCCACCTACGAGGACAGAGATGGTGACTGGATGTTGGTTGGGGATGTACCCTGGAAGATGTTTGTTGAAGCGTGCAAGAGGATAAGGCTCATGATTAGCTCAGAGGCTATTGATCACTTAGGTCCGAGGACTACTTCCAAATGTACCGGCTCCAGCTAG 627 0.4912 MSPPQSGIIHSSESDAVDGNLKEITELTLGLPGTKTSAAAGTKRGFTDTVDLHLGTTSENSANNCLRSTAKFPPPKAQVVGWPPVRASRKNAMKSCKYVKVAVDGAPYLRKVDLEMYESYEHLLRALEAMFCCLTIRNDSMNEMKLMDTGNGIEYMPTYEDRDGDWMLVGDVPWKMFVEACKRIRLMISSEAIDHLGPRTTSKCTGSS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi271g00006 208 ProSiteProfiles PB1 domain profile. 96 191 IPR000270 GO:0005515
Sebi271g00006 208 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 193 IPR003311 GO:0005634|GO:0006355
Sebi271g00006 208 SUPERFAMILY CAD & PB1 domains 88 188 - -
Sebi271g00006 208 Pfam AUX/IAA family 36 198 IPR033389 -
Sebi271g00006 208 Gene3D - 90 198 - -
Sebi271g00006 208 FunFam Auxin-responsive protein 91 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi271g00006 Sebi-Chr271 210234 211518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi271g00006 86 199 B3 DNA Binding Superfamily AT1G59750 28.947 3.18e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sebi271g00006 AUX_IAA 8.3e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi271g00006 K14484 - gmx:100815098 277.715