Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi270g00047 ATGGCTGAATCATTTGTCTCTGATGTTGCTCATTCACTACTGGGGAAGCTTGCTTCTTATGCCTATGAAGAAGCTTCTCGAGCCTATGGTGTCTATGATGATCTGCAACGGTTCAAAGACACTTTGTCAATTGTCAAAGGTGTGCTATTGGATGCTGAAGAGAAGAAGGACAAGAAGCATGGGTTGCGTGAATGGTTGAGGCAGATCGAAAACATCTGCTACCATGCTGAAGATGTCTTGGATGGATTTGAGTTCCAAAACAAGCGAAACCAAGTTGTCAAAGCTTCTGGCAGCACCAGCATGAAGGTAGGCCACTTCTTTTCTTCACACAATCCTCTTGTTTTCCGTATAATGATGGCTCATCAAATAAAAAATGTTAGGGATAGATTGGAGAAGGTAGTAGCTGATGGGAACAGGTTTGGTCTTGAGAGAAGAATTGATGTTGATCCCAGACTTGTTCTGCAAAAGAGAGAAATGACTTATTCCCATGTTTATGCTTCTGGTATGATAGGAAGGGAGGATGATATGGAAGAAATTGTCCAGCTTTTGATGCAACCTCACCCTGATGGGGATGGTGATGGTGATAAAAGTCTCTGTGTTATTCCCATAGTGGGAATTGGAGGCTTGGGGAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGGATGGATCAACTTTTCCAATTGAAAATGTGGGTGTGTGTGTCTGATGATTTTGACATTAGGCAGATAGTTATTAAGATCATCAAATCTGCTTCTGCTTCAGCTTCAGCTCCAACAATTGCTCATGCTCATCAAGAAAACATCAACAACTTAGATATGGACCAGCTAGTAAGTCATCTTACATATAAACTTTCTGGTCAAAAGTTTTTACTTGTCTTAGATGATATATGGAAGGTTGATCGTGCCAAATGGATTGAGTTGAAAGATTTGATAAAAGTAGGTGCAGCAGGAAGTAAAATCTTAGTCACTACACGTAGCAACTCAATTTCTTCAATGATGGGGACGGTTGATCCATATGTTTTGGAAGGCCTTTCTCCAGAGAATTGTTTATCTCTTTTTGTCAAATGGGCATTTAAGGAAGGTGAAGAAAAAAAATATCCAAATCTAGTGGAGATTGGAAAAGAAATTGTCAAAAAATGTCATGGGGTTCCACTAGCTGTGAGAACCTTAGGAAGTTCACTATTCACAAAAATTGATGTAGAGAAGTGGGAATTGATAAGAGACTCTGAGATATGGGAGTTAGAACAAAAGGAAGATGATATTCTACCTGCTCTCAAGCTAAGTTATGATCAGATGCCATCCCATTTAAGGCATTGCTTTACTTACTTTTCCCTTTTTCCCAAAGATCATGACTTTTATGTTGAGTATGTGAAAAATCTTTGGCTGGCCCTTGGATTACTTCAATCCCAAAATGGAAGTCAAAAGACAAATGATATTGCAAGAGAATATATTGATGAGTTACACTCAAGATCATTTATTCAAGATTTCGAAGAGTTTGGCCACAATAACTACTCTTTCAAAGTACATGATTTGGTACATGATCTTGTCGTGTATGTTGCGAATGAGGAGTTTGTAGTGGTAAACTCCCATACTCGGAATATACCTGAGCAAATTTTGTTCAACGGGGCACAGCTCAATTCCCTTGAAGAATTGTATGTGGATTCATGTGGGAGCCTAGAGTCCTTACCGCTTTATATTCTCCCTCAATTACATTCTCTGTCTGTAGGAGACTGTAAGATGTTAAAACTGTCATTGAAGGACGAAAGCCCAATGGGGAACTCTCAGATGGTACAACAGTCAGTGAACCATGAAAACCCAATCCAAAGACTGAGAATGAAAAATCTGTATCTTTGGGGTTTTCCAGAGCTTGAGACGTTGCCTCAATGGATTGAAGGAGTTGCAGACACTTTACATACCTTGAAAATTTTTAATTTTTCTAATTTGAAGATGCTTCCTGAGTTCCTTACAACAATGACTAATCTTAAGATACTCAATATTATTGAATGTCCTCAACTGTTGAGTCTTCCAAGTGACATGCATCGCCTCACTGCCCATCTTGAAGAATTGAGGATAGATGGTTGTCCTGAATTGTGCCGAAAATGTCTGCCGCAATGTGGTGAGTATTGGCCCATCATTGCTCACATCAAAAGAGTTGTCATTGAAGAACCAAGACACGAGGAGGAGAAATGA 2196 0.3948 MAESFVSDVAHSLLGKLASYAYEEASRAYGVYDDLQRFKDTLSIVKGVLLDAEEKKDKKHGLREWLRQIENICYHAEDVLDGFEFQNKRNQVVKASGSTSMKVGHFFSSHNPLVFRIMMAHQIKNVRDRLEKVVADGNRFGLERRIDVDPRLVLQKREMTYSHVYASGMIGREDDMEEIVQLLMQPHPDGDGDGDKSLCVIPIVGIGGLGKTTLAKLVFNDKRMDQLFQLKMWVCVSDDFDIRQIVIKIIKSASASASAPTIAHAHQENINNLDMDQLVSHLTYKLSGQKFLLVLDDIWKVDRAKWIELKDLIKVGAAGSKILVTTRSNSISSMMGTVDPYVLEGLSPENCLSLFVKWAFKEGEEKKYPNLVEIGKEIVKKCHGVPLAVRTLGSSLFTKIDVEKWELIRDSEIWELEQKEDDILPALKLSYDQMPSHLRHCFTYFSLFPKDHDFYVEYVKNLWLALGLLQSQNGSQKTNDIAREYIDELHSRSFIQDFEEFGHNNYSFKVHDLVHDLVVYVANEEFVVVNSHTRNIPEQILFNGAQLNSLEELYVDSCGSLESLPLYILPQLHSLSVGDCKMLKLSLKDESPMGNSQMVQQSVNHENPIQRLRMKNLYLWGFPELETLPQWIEGVADTLHTLKIFNFSNLKMLPEFLTTMTNLKILNIIECPQLLSLPSDMHRLTAHLEELRIDGCPELCRKCLPQCGEYWPIIAHIKRVVIEEPRHEEEK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi270g00047 731 SUPERFAMILY L domain-like 501 706 - -
Sebi270g00047 731 CDD RX-CC_like 2 133 IPR038005 -
Sebi270g00047 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 444 IPR027417 -
Sebi270g00047 731 Gene3D - 155 339 IPR027417 -
Sebi270g00047 731 PANTHER DISEASE RESISTANCE PROTEIN RP 56 694 IPR044974 GO:0006952
Sebi270g00047 731 Gene3D - 345 429 IPR042197 -
Sebi270g00047 731 Gene3D - 430 520 IPR036388 -
Sebi270g00047 731 Gene3D - 10 124 - -
Sebi270g00047 731 FunFam Probable disease resistance protein At1g63360 431 520 - -
Sebi270g00047 731 PRINTS Disease resistance protein signature 285 299 - -
Sebi270g00047 731 PRINTS Disease resistance protein signature 200 215 - -
Sebi270g00047 731 PRINTS Disease resistance protein signature 382 396 - -
Sebi270g00047 731 PRINTS Disease resistance protein signature 658 674 - -
Sebi270g00047 731 Pfam NB-ARC domain 173 432 IPR002182 GO:0043531
Sebi270g00047 731 Pfam Rx N-terminal domain 11 98 IPR041118 -
Sebi270g00047 731 Gene3D Ribonuclease Inhibitor 530 715 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi270g00047 Sebi-Chr270 1213858 1216523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi270g00047 201 469 WRKY Transcription Factor Family AT5G45050 24.908 7.68e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi270g00047 - - gmx:100796004 796.964