Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi270g00029 ATGCTTGCATTCTCCACTACTCCTCTGTTCTCCATGGGATGTCCCTTATTAGAGGAAAAGCCCTTAAGTCATAACCAAAACTACTTGTATAAAGATCATACTGATCCATCCTCATCAGAGTACTCATCATTTACACATCAATTCTCTTCTTCACCACAATCACAGGTAGTTGAGATTGAAAAAGGGTCTAGTGCTACACCATCCTCAGATCCTACCATGGTGATCAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGCAGGAAGATCAATGGCTTGATTTCTTCACTTCGTTCACTTCTTCCATTGTCACATCAAACGAAAAAGATGAGCATTCCAGTCACAATTTCGCGAGTCTTAAAATACATACCTGAGTTACAACAACAGGTGGAAGGACTAACTAAGAAAAAAGAGGAGCTTCTATCCAGAATTTCTCGGCAAGGAGATGCCCTCAACAAAGAATCTCAAAGGAAGATTATTCCCTATCAAAACTCTGATTTTGTAGTTTCAACAAATAGACTCAATGATAATGAGGCTACCATTGAGATTTCTTCTTTTGAAGTCCACAAGACCCCTCTATCTGAGATATTGCTCTGTTTAGAAAATAATGGGCTTCTTCTGCTTAATGCTTCTTCCTCTGAAACCTTTGGAAGGAATAGGGTCTTCTATAACTTGCATTTCCAGGTGGAAAAAACTCATAGATTAGAGTCTGATATTCTGACTCAGAAGCTTTTGTCAATATGTGAGAAGAAGCAAAGACTTTTGTAA 771 0.3891 MLAFSTTPLFSMGCPLLEEKPLSHNQNYLYKDHTDPSSSEYSSFTHQFSSSPQSQVVEIEKGSSATPSSDPTMVIKKLNHNASERDRRRKINGLISSLRSLLPLSHQTKKMSIPVTISRVLKYIPELQQQVEGLTKKKEELLSRISRQGDALNKESQRKIIPYQNSDFVVSTNRLNDNEATIEISSFEVHKTPLSEILLCLENNGLLLLNASSSETFGRNRVFYNLHFQVEKTHRLESDILTQKLLSICEKKQRLL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi270g00029 256 FunFam Transcription factor ORG2 71 156 - -
Sebi270g00029 256 SMART finulus 81 133 IPR011598 GO:0046983
Sebi270g00029 256 Gene3D - 70 159 IPR036638 GO:0046983
Sebi270g00029 256 MobiDBLite consensus disorder prediction 51 71 - -
Sebi270g00029 256 Coils Coil 124 144 - -
Sebi270g00029 256 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 63 247 - -
Sebi270g00029 256 Pfam Helix-loop-helix DNA-binding domain 76 128 IPR011598 GO:0046983
Sebi270g00029 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 145 IPR036638 GO:0046983
Sebi270g00029 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi270g00029 Sebi-Chr270 761075 762751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi270g00029 73 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 48.087 3.48e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi270g00029 HLH 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi270g00029 - - gmx:100803424 277.715