Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00226 ATGCCATTGCGAGGTCGCACTGCAACTGTAAGCCTCTGGTGGTCTCTGCATACCGTTTTCAACACCTATCAGTCTCATTGTCTTCACCCTTCTCCCATTCACCTCAATTTCCATTCTTTCGCCCAACCCCAGGTTTCTGCCCACTTGGACGACCATTGCGATGAATTTTTGCCATGGTTGGAGCGGAAAGCGGGTTCTAGGATTTCTTCTTCGCTTTCAATTGGGAAATCTTCATATGGAAGGTCCCTGTTTGCTTCTAAGATAATACAAACTGGAGATTGCATTTTACAGGTTCCTTACAGTGTGCAAATAACTGCGGATAATCTCCCTCCTGAAATCAGATCTTTGATTAGTGAGGAAGTTGGAAACATTGCAAGACTTGCTATTGTTATTCTAATTGAGAAGAAATTGGCTCAGGGCTCTGAGTGGGAACCTTATATCAGCTGTCTTCCACAGCAATGGGAGCTGCATAATACGATATTCTGGAATGAAAGTGAGCTGGAGATGATTCGTCAAAGTTCAGTTTATCAAGAAACTATTAACCAGAAGTCTCAAATTGAAAAGGACTTTTTGACAATCAGGCCCGTTCTTCAATCTTTCTATCAATGTTTTGGAGATTTTACTTACAAGGACTTCATGCATGCATGTACACTAGTTGGTTCTCGAGCATGGGAAAGCACTAAGGGTTTATCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGGGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAGTTACTGCTGATCGTGACTATGCTCCTGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTGATGCTGGACTTTGGTTTTACAATTCCATATAACATTTATGATCAGGTTCAAATCCAGTTTGATATACCTAAGCATGATCCTCTGCATGCCTTGAAATTGGAACTCTTACAGCAGTACTTTGTGCCTCCAACCGATGATATGAAGGGTTTGAAGTATTCTGTGAATACCTTCACAATCAAGGAGGTGAGATCTGCTAGAGGAAAAGGAAAGGGTCTTCCACAATCACTTCGTGCATTTGCTCGTGTTCTTTCTTGTACCACTCCTCAGGAACTTAATGATTTGGTCATAGAAGCTGCACAAACTGATGGTAGGCTGGCTAGGCGCCCTTTACAGGATATCAACAAAGAGAGACAAGCACACCTGATGCTGTCATCATTATTCATCCAATTAATCGAGAAGCGCTACGCAACTATTATGTCATTGGATTCTTCCAATTCTCGCTCCTATTGTGAAGCAGTTGATGTTAGAAGACAAATGGCTCGAGATCTCATACATGGTGAGCTTCGCATTCTCAAATCGGCTTCTGCCTGGCTGGAGAACTACTGTTTTTCCTTGACTTGA 1413 0.4161 MPLRGRTATVSLWWSLHTVFNTYQSHCLHPSPIHLNFHSFAQPQVSAHLDDHCDEFLPWLERKAGSRISSSLSIGKSSYGRSLFASKIIQTGDCILQVPYSVQITADNLPPEIRSLISEEVGNIARLAIVILIEKKLAQGSEWEPYISCLPQQWELHNTIFWNESELEMIRQSSVYQETINQKSQIEKDFLTIRPVLQSFYQCFGDFTYKDFMHACTLVGSRAWESTKGLSLIPFADFLNHDGVSEAIVMSDDDKQCSEVTADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLHALKLELLQQYFVPPTDDMKGLKYSVNTFTIKEVRSARGKGKGLPQSLRAFARVLSCTTPQELNDLVIEAAQTDGRLARRPLQDINKERQAHLMLSSLFIQLIEKRYATIMSLDSSNSRSYCEAVDVRRQMARDLIHGELRILKSASAWLENYCFSLT 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00226 470 Pfam Rubisco LSMT substrate-binding 308 455 IPR015353 -
Sebi26g00226 470 FunFam Predicted protein 293 468 - -
Sebi26g00226 470 Pfam SET domain 80 277 IPR001214 GO:0005515
Sebi26g00226 470 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 421 - -
Sebi26g00226 470 Gene3D - 293 465 IPR036464 -
Sebi26g00226 470 SUPERFAMILY SET domain 50 295 IPR046341 -
Sebi26g00226 470 Gene3D set domain protein methyltransferase, domain 1 49 290 - -
Sebi26g00226 470 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 49 290 - -
Sebi26g00226 470 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 304 465 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00226 Sebi-Chr26 3072316 3078497 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi26g00226 SET 2.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00226 K19199 - gmx:100818002 697.197