Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00209 ATGGCGTCGTTGCTGCCATACGCTGATGTTGATTCCAATTTGAGGTCTTTGGCTGCTCGTGCTGAGGGTTTCGGCCGCCACGCCATCGGTGGCCTCCACGGTCTTCTCTATTCCGTCACCACCCTTGCAGATGATGGTCCCGGGTCCCTTCGTGATGGATGTCGTAAAACGGAGCCACTATGGATTGTTTTTGAAGTTTCAGGTACAATTCACCTTTCCTCATACCTCAGTGTCTCATCTTATAAGACAATTGATGGCAGAGGCCAGAGGATAAAATTGACTGGAAAGGGATTAAGGCTCAAAGAATGTGAGCACATCATTATTTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATCAAACCAAATTCTAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTATGATGATGGTCTTATAGACATTACAAGACAGAGCACAGATATTACTGTATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGATCCATCTCACGTTGGTGATAGATGCATCCGTGTGACCATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAGCCTCGTCTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGCAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAATGCAACATATATGAAGCAGGAGCTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCAGATAAGGAAGAGGCCAAGTCTGGCTCCATATTATCTGAAGGAGATGTGTTTCTGAATGGTGCTGAGCCATGCTTATTAAGAGAAAATAGAGAAGAATCCATGTTCCATCCTAGTGAGTATTACCCAACATGGACGATGGAAGCAGCTGCACATTCTCTCAGAGATGTCCTCCAGTTATGTGCAGGCTGGCAGTCCATTTGTAGGCCAGTAGACCATATGGTCCTTAATTAG 999 0.4424 MASLLPYADVDSNLRSLAARAEGFGRHAIGGLHGLLYSVTTLADDGPGSLRDGCRKTEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWAIYAVCASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEEAKSGSILSEGDVFLNGAEPCLLRENREESMFHPSEYYPTWTMEAAAHSLRDVLQLCAGWQSICRPVDHMVLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00209 332 Pfam Pectate lyase 76 238 IPR002022 -
Sebi26g00209 332 PANTHER PECTATE LYASE 18-RELATED 9 287 IPR045032 GO:0030570
Sebi26g00209 332 SMART amb_all 32 245 IPR002022 -
Sebi26g00209 332 Gene3D - 6 318 IPR012334 -
Sebi26g00209 332 SUPERFAMILY Pectin lyase-like 20 328 IPR011050 -
Sebi26g00209 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Sebi26g00209 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Sebi26g00209 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00209 Sebi-Chr26 2849577 2851427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00209 42 330 Polysaccharide Lyase AT3G55140 81.661 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00209 K01728 - gmx:100802068 624.009