LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi26g00187	ATGGTTGATCATTGTGAAGGAAATTCTGTTAATGGAGATGAGGTTAATATTTCGAATGATGGCAATTTTTATTGTAAGGGGGGTGATTTAGGACAGAATGAGGATGAAGAATATATGAAGAGAATTAGTGAATTGACTGTTGATGATATAAGAGGTATTGAATTTGATGATGAGGAAGCAGCTTGTAGTTTTTATAAAAGCTATGCAAAATGTAATGGGTTTGTTGTTAGGAAGGATGAGGTAGACCATGATTTTAAGGGAAATATTGTTATGAGACAACTGGTGTGTAACAGAGAGGGTGAAAGGAAGAAGAAACATTTGATGCGTGTGGACAGAGTTAGGCAGCCCAGGGCTTTGACTCGAACTCGGTGTCCTGCAAGGCTAAGAGTACATTATAGTTTCAAAACTGGTAAATGGAGGGTTGCTGTATTTGAGGAAAAGCACAATCATGAGTTAACTCCTCTTAAATTTGTTCATTTGATACCTGCTTATAGAGGCCAGAAGTGTGGTCATTCAGAGTTGGGTTTTTGTAAGAAGGATCTATATAATCACATTGATAAGGAGAAGAGAGCAGTTATAGAAGATGGGGATGCTTTTGCTGCATTATGTATTCCTTGCAGCCATATTTTCTGTTCCATGAAGAATGAGCATGTGAATGAGTTTCCAGCATCATTGGTTTGCAAGAGATGGACAAAGTCAACAAAGATTGACTTTGTCCAAAGGATTAATTCAGAAGAACAAGGGTCTGAAAAAAGGACTTTGTTGCAATTAGGTGCATTGGCTGGTGCATGTAATAGGCTTTTTGAAGTTTGTTCCCAAAGATTTTCTGAATTTTCAGAGAATTACCAAGAGATATACAATGTTACTATTAAAATTGAGAAGAAGGGTGATGGTAATTGCAAGGTGAAATGCCCATCAAATGTTGTTGGAGATCCTACTGTTGTTAAAACAAAAGGTGCACCTCGTAAGAAAAAAGGTATGAAGCTTAAGAGACGTTGTTCCCATTGTAAAAGAAGGGGTCACAACCTTCGTAGATGTCCTCGACTGGTTGAGCCTGATCATTTATATGAGGTTGATGAAGATGAAGAAGATTTGGACGTCGAATCTAACGATGACACAACACACTTTAAAGATGTAACTTCTGCTGGAGATAATGTTAACCTGAATCGCAATTCTGAACAGAAGGTTGAAGTTAGTCAATGTGATGTGAAGAAAACAAATATTAAACACAATAAGATGACACAAAATGGCATATATAACTTTGATTCTCAAAGAACTTCCTATAATGAAATGGGAATTGGTTGTGCGCATGTTAAAAAGGAGGGAGAAAAGCCAACAATGATGAATGGTGTTTTTTCTGTTCAATACCCTTATAGTCTAATGAATGGGCAAAGCAATCATGGTGTGCCAATATTCCCCCAATTTCCTTCTATTTATAATTATCAGGCATATACACAAGTGTCGCCATGGTCTGGAACTAATGTTGGACCGTTTGACACACCTTTTATGGGAGTTTTGGAGCAAATGGATCGTCAAGCTAAGAATGCAGCAAACATTGAGAGGAAATGA	1569	0.3735	MVDHCEGNSVNGDEVNISNDGNFYCKGGDLGQNEDEEYMKRISELTVDDIRGIEFDDEEAACSFYKSYAKCNGFVVRKDEVDHDFKGNIVMRQLVCNREGERKKKHLMRVDRVRQPRALTRTRCPARLRVHYSFKTGKWRVAVFEEKHNHELTPLKFVHLIPAYRGQKCGHSELGFCKKDLYNHIDKEKRAVIEDGDAFAALCIPCSHIFCSMKNEHVNEFPASLVCKRWTKSTKIDFVQRINSEEQGSEKRTLLQLGALAGACNRLFEVCSQRFSEFSENYQEIYNVTIKIEKKGDGNCKVKCPSNVVGDPTVVKTKGAPRKKKGMKLKRRCSHCKRRGHNLRRCPRLVEPDHLYEVDEDEEDLDVESNDDTTHFKDVTSAGDNVNLNRNSEQKVEVSQCDVKKTNIKHNKMTQNGIYNFDSQRTSYNEMGIGCAHVKKEGEKPTMMNGVFSVQYPYSLMNGQSNHGVPIFPQFPSIYNYQAYTQVSPWSGTNVGPFDTPFMGVLEQMDRQAKNAANIERK	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi26g00187	522	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	30	222	-	-
	Sebi26g00187	522	Pfam	FAR1 DNA-binding domain	63	153	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi26g00187	Sebi-Chr26	2558314	2561485	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Sebi26g00187		FAR1	2.2e-20	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi26g00187	-		-	vvo:131629359	204.527