Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00183 ATGTGGATACTGACCATTGTGTTCTACACATGTGTTTTGATCCCATTGATGCAACTGAAGAGGGCACTTTCAAGCATGTTTGGCCTCATTCTCATGGTTTTCTTCTCTTATGACAGCAAAGGTATAACCAAGGAGATGGAGTTCCCAGAAATTCCATCCTTACCCGTGGCCAGGTTCGAAGATTTGAGAAGCCAATCATCTGTAGGAGAAGATGAACAGAGAGAAGAGGAGATTTGTTCCATTTGCTTGGTGGAGTTTGAAGGAGAAGATGCAGTGAGCAAGCTGGGAAGATGTGGCCATGTGTTCCATATCAATTGCATTGACCAATGGCTAGACCGCAATCAATTCTCTTGTCCACTTTGTAGGTCATTTTTATTTTCTCCACATCAAATCCATACAAACAAATAG 408 0.4216 MWILTIVFYTCVLIPLMQLKRALSSMFGLILMVFFSYDSKGITKEMEFPEIPSLPVARFEDLRSQSSVGEDEQREEEICSICLVEFEGEDAVSKLGRCGHVFHINCIDQWLDRNQFSCPLCRSFLFSPHQIHTNK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00183 135 ProSiteProfiles Zinc finger RING-type profile. 79 122 IPR001841 -
Sebi26g00183 135 SMART ring_2 79 121 IPR001841 -
Sebi26g00183 135 Pfam Ring finger domain 79 122 IPR001841 -
Sebi26g00183 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 127 IPR013083 -
Sebi26g00183 135 PANTHER RING ZINC FINGER PROTEIN-RELATED 51 129 - -
Sebi26g00183 135 SUPERFAMILY RING/U-box 70 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00183 Sebi-Chr26 2537924 2538331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00183 5 128 C3H Transcription Factor Family AT4G38140 41.129 4.64e-26 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00183 - - pvu:PHAVU_007G012000g 172.17