Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00178 ATGGCATCGCAGGGGAGGAAGAGAGTTGATGCCGTCGATTCCCGTTCTGCTTCAGTTCTTGTTCGCGCCAAAGATGGCAGTGCTTTTGCTCGATGCGAAGAGTGCAACAAGGATGTGCCGGTGGCATTGATCAGTATGCACAGTTGCAGCCTTGAAGCTAAAATTAAGATGAACCTCGATGCTCAGGTTGTTGAACAAACTACTGAAGTCAAGAAGCCAGAGAGGAAGAAGCCTAAATCTAAAGAACCAAAGGCAAAAAGGGCCAAGGTTGAGAAAGGGAAGAAGAAGGTCAAGGATCCTAACATGCCCAAGCGTCCTCCCACTGCCTTCTTTGTCTTCTTGGATGATTTTAGAAAAACTTTCAAGGAAGCAAATCCTGATTCAAAAGATGTTAAAAGGGTTGGCAAAGAGGCTGGTGAGAAGTGGAAGGCTATGACTGAGGAAGAGAAGAAGCCTTACTTGGATAAAGTTGCTGAACTTAAGGCAGAATATGAGAAGGCTATGGCAACCTACAATGCTGCTGAAGATGAAGGTCAAGAGGCTTCTGATAAGGAAGCCACTGCAGAAGACGAAGAGATAACAGAAGAGGAGTAG 594 0.4562 MASQGRKRVDAVDSRSASVLVRAKDGSAFARCEECNKDVPVALISMHSCSLEAKIKMNLDAQVVEQTTEVKKPERKKPKSKEPKAKRAKVEKGKKKVKDPNMPKRPPTAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKAMTEEEKKPYLDKVAELKAEYEKAMATYNAAEDEGQEASDKEATAEDEEITEEE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00178 197 Gene3D High mobility group box domain 87 188 IPR036910 -
Sebi26g00178 197 MobiDBLite consensus disorder prediction 172 197 - -
Sebi26g00178 197 MobiDBLite consensus disorder prediction 66 105 - -
Sebi26g00178 197 MobiDBLite consensus disorder prediction 77 93 - -
Sebi26g00178 197 SUPERFAMILY HMG-box 94 173 IPR036910 -
Sebi26g00178 197 Coils Coil 157 191 - -
Sebi26g00178 197 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
Sebi26g00178 197 MobiDBLite consensus disorder prediction 182 197 - -
Sebi26g00178 197 CDD HMG-box_AtHMGB1-like 104 164 - -
Sebi26g00178 197 SMART hmgende2 102 173 IPR009071 -
Sebi26g00178 197 Pfam HMG (high mobility group) box 103 172 IPR009071 -
Sebi26g00178 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00178 Sebi-Chr26 2462159 2463451 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sebi26g00178 HMG_box 4.3e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00178 K25507 - gmx:100306558 275.404