Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00122 ATGAACATCATTATGCAAAATTTAACTGAGAGGCTAAGACCCCTTGTTGGTTTGAATGGTTGGGACTACTGTGTCAACTGGAAATTGAGTGAAGACCAGAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAACAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCAATGGCTCCATGCAGAGATACCATGATTCATGCTCAGACCCTATTGACAAACCAACCAAATTGGTTCAACTATTCCAATAGCTTGGATCCGAACACTTTAGAAGAAACAATTGGGACCCAGGTTTTGATTCCGGTGCCAGGTGGACTAATTGAGCTATTTGTAACTAAACAGGTGCCTGAAGATCATCAGGTAATAGATTTTGTCACAACCCAGTGCATTTCCTTGATGGAGCAGGAAGCAGTGAACCACTCAATAAGCTTCAATATTGATGTAAATTCAATGGGCAACATGCAATCAAATCAACTTCTAGGTGATGAAAATGAAGGGAATAACAAGAACAATCATTTTCAGCCATCAGAGACTTCAAGTCTCCCTCATGACATCTCTTTAGACCGCATTGGTCTCTGCAGTTCTCCACTGAACTTCATGCAGCAATTCAATTACAACCAACAACAGAACAGAATGAAAAATGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGACAAGCAAAATGACCCTCTCAAATCCACCCCAGAAGAGGATCATGATAAATGCTTGATGATGGATACACAATATGTGGAACCTTTTGACACCAAGGAAAAGCAAGGACAAGTTGTTGGTCGTTCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAGTATAGGAGAAGGAATGGGAAAGGAAACCAATCAAAAAACCTTGTAGCAGAGAGGAAGAGAAGGAAGAAACTCAATGACAGGCTATATAACCTTCGTTCCTTGGTTCCAAGAATCTCAAAGCTAGATAGAGCTTCTATTCTTGGGGATGCCATTGAGTATGTGAAGGATTTGCAGAAACAAGTGAAAGAGCTTCAAGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGAAAGCAACTGCATCAATGGCAATAATCAATATGTGGGTGTCCAACCAGATATCCCAAAAGCAGAACATGGTAAGCATGTGGGGACATCAGGGAATGGCTATATGTCAAAACAAAAACAGGAAGATGCTACTGCCATTGACAAACAGACACAGCAAATGGAGCCTCAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTAGTGGATTTGTGAAATTGATGGAGGCATTTAGCACTCTGGGTATGGATGTAGTACATGCCACAGTAACCAGCCATAAGGGACTAGTGTCAAATGTATTCAAAGTGGAGAAAAGGGACAGTGAAATGGTTGAGGCTGAAGATGTAAGAGAGTCACTACTAGAGCTTACAAGGAACCGATCAAGAGGGTGGACTCATGAGATGACAGCATCATCAGAAAATGGTGTGGGGAGGGATCAACATCACCTTCACAACCACCAGATTGGAGCCTATCATCATCCACAACAATTTCATAGTTAA 1629 0.4187 MNIIMQNLTERLRPLVGLNGWDYCVNWKLSEDQRFLEWLGCCCAGTENNQNAGEEHLFPVSSMAPCRDTMIHAQTLLTNQPNWFNYSNSLDPNTLEETIGTQVLIPVPGGLIELFVTKQVPEDHQVIDFVTTQCISLMEQEAVNHSISFNIDVNSMGNMQSNQLLGDENEGNNKNNHFQPSETSSLPHDISLDRIGLCSSPLNFMQQFNYNQQQNRMKNDAFSEEYQGSFLHDKQNDPLKSTPEEDHDKCLMMDTQYVEPFDTKEKQGQVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENSDTGAESNCINGNNQYVGVQPDIPKAEHGKHVGTSGNGYMSKQKQEDATAIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPSGFVKLMEAFSTLGMDVVHATVTSHKGLVSNVFKVEKRDSEMVEAEDVRESLLELTRNRSRGWTHEMTASSENGVGRDQHHLHNHQIGAYHHPQQFHS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00122 542 CDD bHLH_AtAMS_like 302 372 - -
Sebi26g00122 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Sebi26g00122 542 MobiDBLite consensus disorder prediction 230 249 - -
Sebi26g00122 542 MobiDBLite consensus disorder prediction 259 311 - -
Sebi26g00122 542 Coils Coil 338 365 - -
Sebi26g00122 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 362 IPR036638 GO:0046983
Sebi26g00122 542 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 184 501 - -
Sebi26g00122 542 CDD ACT_UUR-ACR-like 436 499 - -
Sebi26g00122 542 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 69 131 IPR025610 -
Sebi26g00122 542 Pfam Helix-loop-helix DNA-binding domain 306 349 IPR011598 GO:0046983
Sebi26g00122 542 Gene3D - 288 364 IPR036638 GO:0046983
Sebi26g00122 542 MobiDBLite consensus disorder prediction 164 186 - -
Sebi26g00122 542 SMART finulus 305 354 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00122 Sebi-Chr26 1584140 1586754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00122 5 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 45.081 1.09e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi26g00122 bHLH-MYC_N 3e-07 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00122 - - gmx:100798282 775.393