Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00113 ATGATGTCTTCTCAAGGCCGTGCCGTTCACTTTTACACACAGATTGATGAATACATCCTTCGAACTGGGGAGCTGAGGGTTCCTCCAAATTTTGTGAGTAGATATTGGAGTGGAATGTCGAATCCTGTACACTTTCTCCTCCCTGATGGTGCTAAATGGGAAGTGACTTGGAAAAAACGTGATGCTGAAGTGGTTTGGTTAGGCAATAATTGGAAGAAATTTGCAAAATTTTATTCTTTGGATCATCAACATCTTTTGATGTTCAAATACGAAAGGAAGTCACAGTTTCAGGTTGTGATATGTGATCAAAGTTTCTTGGAAATAGGGTACCCTGTGTTCATTGGAACCTTTGGCGTTGAAGAGATCAGTGATCTGAGTGGCAACTCGAGAGAAATGTTTGATGGTTCTTCAACTCCCCGAAATAAAAGGCCAAATTCTTCTCCTCAAACTGATAGAATCCCTGAAATGAAAACCTTCCATGAAGGTTTTGAATTTGATACTACTAAGCCAAAATGTACAGCAAGTGAACAACAGATGGAGAGTGTTACTCTTTGGGTTTCTGAGGAGAGAACTTGGGATGTTAAATTAAATGTGAATCATTCCAATGGACAAACATCGCTTAGAACTGGTTGGAGGAATTTTGCAAAGGAAAATCATTTGGAACTTGGTGATATCATACCGATGGAATTCATGAGAAAATATGTGATTGATGGGGTAACTGATGTGAAGCTGCGAGATGGGGAGAGATTATGGCCTGTGAAGCTAAACTATTCTTCAGAGTCATCCTATGGAGTATTCGCTGCGGGTTGGTCTGCATTTGTGAGGGACTGTAACTTGAAGGCAGGAGATGTTTGTCTCTTTGAGCTTGTTGATGAGCAAAATTTGGTTATTCATGTTAGAGTTCTTTTAAGGCGCATTGACTGA 924 0.4015 MMSSQGRAVHFYTQIDEYILRTGELRVPPNFVSRYWSGMSNPVHFLLPDGAKWEVTWKKRDAEVVWLGNNWKKFAKFYSLDHQHLLMFKYERKSQFQVVICDQSFLEIGYPVFIGTFGVEEISDLSGNSREMFDGSSTPRNKRPNSSPQTDRIPEMKTFHEGFEFDTTKPKCTASEQQMESVTLWVSEERTWDVKLNVNHSNGQTSLRTGWRNFAKENHLELGDIIPMEFMRKYVIDGVTDVKLRDGERLWPVKLNYSSESSYGVFAAGWSAFVRDCNLKAGDVCLFELVDEQNLVIHVRVLLRRID 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00113 307 Gene3D - 5 105 IPR015300 -
Sebi26g00113 307 Gene3D - 165 225 IPR015300 -
Sebi26g00113 307 MobiDBLite consensus disorder prediction 128 153 - -
Sebi26g00113 307 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Sebi26g00113 307 ProSiteProfiles B3 DNA-binding domain profile. 10 104 IPR003340 GO:0003677
Sebi26g00113 307 CDD B3_DNA 18 102 IPR003340 GO:0003677
Sebi26g00113 307 Gene3D - 226 304 IPR015300 -
Sebi26g00113 307 PANTHER B3 DOMAIN-CONTAINING 245 293 - -
Sebi26g00113 307 ProSiteProfiles B3 DNA-binding domain profile. 225 305 IPR003340 GO:0003677
Sebi26g00113 307 SUPERFAMILY DNA-binding pseudobarrel domain 181 232 IPR015300 -
Sebi26g00113 307 CDD B3_DNA 225 302 IPR003340 GO:0003677
Sebi26g00113 307 SMART B3_2 11 104 IPR003340 GO:0003677
Sebi26g00113 307 SMART B3_2 214 305 IPR003340 GO:0003677
Sebi26g00113 307 SUPERFAMILY DNA-binding pseudobarrel domain 225 301 IPR015300 -
Sebi26g00113 307 MobiDBLite consensus disorder prediction 129 153 - -
Sebi26g00113 307 Pfam B3 DNA binding domain 225 300 IPR003340 GO:0003677
Sebi26g00113 307 Pfam B3 DNA binding domain 17 103 IPR003340 GO:0003677
Sebi26g00113 307 CDD B3_DNA 180 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00113 Sebi-Chr26 1520654 1523021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00113 11 299 B3 DNA Binding Superfamily AT3G18990 26.190 5.72e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi26g00113 B3 6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00113 - - aprc:113871918 175.637