Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00112 ATGTCTTCTTCTTCTCAAGGCCGTGCCTCTGCCGTTCACTTCTTCAAGATCATTGATGAAAACTGCCTTCGAAGTGGAGACCTCAGGATTCCTCGGCGTTTTGTGAGTAATTATTGGGAAGGAATGTCAAACCCTCTAAACTTTTTGCTTCCTGACGGTGCTAAATGGGAAGTGACTTGGGAAAAACGTGGGGATGATGTATGGTTAGGGAATAACTGGAAGAAATTTGCATCATTTTATTCTCTGGATCATGAGCATCTTTTGATGTTCAAATACCAACGAAAGTCACAGTTTCAGGTTGTGATATGTGATCAAAGTGGCTTGGAAATTGGGTACCCTGTGTTTAAAGGAACTTTTGATGCTCAAGAGATCAGTGATCAGAGTGAGGATCCTAAATGGCATTCCAGCCAACGTGTGCAAACTGATATAGTTCAACCTCGGAGGACAGAGCTTGAGATCAAAAGATCCCATTCAGCTTTTGACAATACAAAGCCCAAAAGTAGAGGTAGAAAACGAAACATGAGGAGAAGCTCAAAATCTGAGGCCACTGAAAGTAAGAAGCCGTTACTAAATACTGCAAGTAGCAGTGCGTTGGAGAGAGCCAAGGCTTACTGCACTACGAACCCCTCCTTCATTCGTGAGATGCGACGATCACATGTTGAAAGACATATTATGCAAAAGGAGGAAGATAGTGCTACTCTTCGGGTTTCTGAGAGAACTTGGGATGCTAAGTTACATCTGAATCGTTGCAATGGACAAATAACACTTAGTAGTGGTTGGAAGAATTTTGTAGAGGACAATAATTTGAAACTCGGTGATGTTTGTGTTTTTGAGCAAATTAAGTCAGAAGGAGTTTCATTTAAAGTTGTTATTTTTCATGCCAGAGAAGAATCAAGCCCTCCCGGGTTTCAAGCTTATGAGGCTGGAGCAAACCGAAGTAAACTGACAGGGGTTCAAAGTAACTTTGCTCAAAGGGAAGGGGTTGGAGGAATTGCAAAGAAGTTCCCAAGAACCAATAATATCTTTGATGGTTCTGAGTTTCCTAGAAATAACAGCACAATGTCAGAGAATCAGTTCACCCTCTCTTTAAAGCCTAATCAATTGAGTCATGCAATCATACCAATGAAATTCATCAGAAAATATGTCATTAATGAGGTAACTGATGTGAAGCTGCGAGTTGGGGAGAGATCATGGCCTGTAAAGCTATATTATTATTCAAAGCCATGCTATGGAAGATTCTCTGCGGGTTGGTCTGCATTTGTGAGGGACTGTAACTTGAAGCCAGGAGATGTTTGTCTCTTTGAGCTTGTTGATGAGCAAAATTTTGTGCTTCAAGTTAGTATTAAGGCATGTTAA 1356 0.41 MSSSSQGRASAVHFFKIIDENCLRSGDLRIPRRFVSNYWEGMSNPLNFLLPDGAKWEVTWEKRGDDVWLGNNWKKFASFYSLDHEHLLMFKYQRKSQFQVVICDQSGLEIGYPVFKGTFDAQEISDQSEDPKWHSSQRVQTDIVQPRRTELEIKRSHSAFDNTKPKSRGRKRNMRRSSKSEATESKKPLLNTASSSALERAKAYCTTNPSFIREMRRSHVERHIMQKEEDSATLRVSERTWDAKLHLNRCNGQITLSSGWKNFVEDNNLKLGDVCVFEQIKSEGVSFKVVIFHAREESSPPGFQAYEAGANRSKLTGVQSNFAQREGVGGIAKKFPRTNNIFDGSEFPRNNSTMSENQFTLSLKPNQLSHAIIPMKFIRKYVINEVTDVKLRVGERSWPVKLYYYSKPCYGRFSAGWSAFVRDCNLKPGDVCLFELVDEQNFVLQVSIKAC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00112 451 CDD B3_DNA 359 448 IPR003340 GO:0003677
Sebi26g00112 451 SMART B3_2 204 295 IPR003340 GO:0003677
Sebi26g00112 451 SMART B3_2 359 450 IPR003340 GO:0003677
Sebi26g00112 451 SMART B3_2 14 106 IPR003340 GO:0003677
Sebi26g00112 451 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Sebi26g00112 451 SUPERFAMILY DNA-binding pseudobarrel domain 358 448 IPR015300 -
Sebi26g00112 451 CDD B3_DNA 13 104 IPR003340 GO:0003677
Sebi26g00112 451 MobiDBLite consensus disorder prediction 126 192 - -
Sebi26g00112 451 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Sebi26g00112 451 Gene3D - 6 107 IPR015300 -
Sebi26g00112 451 MobiDBLite consensus disorder prediction 145 167 - -
Sebi26g00112 451 SUPERFAMILY DNA-binding pseudobarrel domain 206 293 IPR015300 -
Sebi26g00112 451 PANTHER B3 DOMAIN-CONTAINING 245 440 - -
Sebi26g00112 451 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
Sebi26g00112 451 Pfam B3 DNA binding domain 364 448 IPR003340 GO:0003677
Sebi26g00112 451 Pfam B3 DNA binding domain 217 293 IPR003340 GO:0003677
Sebi26g00112 451 Gene3D - 345 450 IPR015300 -
Sebi26g00112 451 Gene3D - 190 297 IPR015300 -
Sebi26g00112 451 ProSiteProfiles B3 DNA-binding domain profile. 239 295 IPR003340 GO:0003677
Sebi26g00112 451 ProSiteProfiles B3 DNA-binding domain profile. 356 450 IPR003340 GO:0003677
Sebi26g00112 451 CDD B3_DNA 209 292 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00112 Sebi-Chr26 1513876 1516245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00112 359 447 B3 DNA Binding Superfamily AT3G18990 36.957 1.65e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi26g00112 B3 2.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00112 - - aprc:113871918 398.282