Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00107 ATGGCTACTACTTTTCTTCCCGGGCGAAATGCCAATTTGCCTATCCATTTCTTCAAGATTATTCTTGAAACAAATGTTGAAAGGCTTAAAATACCCAACAAGTTTACAAAGAGGCATGAAGGTGGTTTCTCAAATCCTGTTTTTATCAAGCCTCCTGATGGTACTGAATGGGAAGTGTATTGGACAAAACAGAATGATGAGATTTGGTTCGAAAAGGGTTGGAAAGAATTTGCTGAAAATTACTCCCTAAATCACGGACATTTGGTGTTGTTCAAATATGAAGGAACTTCCCAGTTTGATGTACTCATACTTGACCAAAGTGCTGTAGAAATAGACTATCCTTCCAATGACACACCAGTTGAAGATGACAACCTTGATCACCACAGTGATGATGAATCAATTAGAATCTTGGAGGGAATCCCTCCAAACCTAAAGGCTAGACCAAAGTCACCATTGTCTTCTCCTCAATCTCATAAGAAAATGAGAAATAATGCTGTTACACATGGGAATGTGGAAAGTAACTCCAATAAGCGAAAGTTGCATGCAGGTGATCAATCTGATCCTGATCAAGGGAAAAAGTTTCAGAAAACTAGCAAACATGAACTGAAAGATGTTGAGAAGACTACTGAAAGAAACTTGTCGTTGAATACTCCTAGGACACTTAAAGCTCAGGAAATAGCCAAAAAATTCTCCACAGGCAATCCGTTTTTCACCGTGGACATAAAGCAATCTCATCTGGAAAAGAAGGCAGTGAAGCATGTACCAAAGTTCCTAGATTGTGAGGGCAAGGAGCATTATGCGAGGATGCAGCTTGGCGAAAGATGGTGGACAGTGAAGTTGGTGCGTTATCCTAATATGCAATATGATCGACTCACCTCTGGTTGGTCTTTGTTTGCAACAGAGAGTAAATTGGAAGTTGGAAACGTTGTTATCTTTGAGGTGGTTGATAGACAAGTTCCAGTGTTAAAAGTCCATGTCTTCGATTAG 987 0.3982 MATTFLPGRNANLPIHFFKIILETNVERLKIPNKFTKRHEGGFSNPVFIKPPDGTEWEVYWTKQNDEIWFEKGWKEFAENYSLNHGHLVLFKYEGTSQFDVLILDQSAVEIDYPSNDTPVEDDNLDHHSDDESIRILEGIPPNLKARPKSPLSSPQSHKKMRNNAVTHGNVESNSNKRKLHAGDQSDPDQGKKFQKTSKHELKDVEKTTERNLSLNTPRTLKAQEIAKKFSTGNPFFTVDIKQSHLEKKAVKHVPKFLDCEGKEHYARMQLGERWWTVKLVRYPNMQYDRLTSGWSLFATESKLEVGNVVIFEVVDRQVPVLKVHVFD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00107 328 MobiDBLite consensus disorder prediction 138 216 - -
Sebi26g00107 328 ProSiteProfiles B3 DNA-binding domain profile. 276 328 IPR003340 GO:0003677
Sebi26g00107 328 MobiDBLite consensus disorder prediction 174 210 - -
Sebi26g00107 328 SMART B3_2 236 328 IPR003340 GO:0003677
Sebi26g00107 328 SMART B3_2 17 107 IPR003340 GO:0003677
Sebi26g00107 328 Pfam B3 DNA binding domain 27 103 IPR003340 GO:0003677
Sebi26g00107 328 SUPERFAMILY DNA-binding pseudobarrel domain 15 114 IPR015300 -
Sebi26g00107 328 CDD B3_DNA 256 328 IPR003340 GO:0003677
Sebi26g00107 328 SUPERFAMILY DNA-binding pseudobarrel domain 230 328 IPR015300 -
Sebi26g00107 328 Gene3D - 217 328 IPR015300 -
Sebi26g00107 328 PANTHER B3 DOMAIN-CONTAINING 15 324 - -
Sebi26g00107 328 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Sebi26g00107 328 MobiDBLite consensus disorder prediction 149 173 - -
Sebi26g00107 328 CDD B3_DNA 16 105 IPR003340 GO:0003677
Sebi26g00107 328 Gene3D - 12 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00107 Sebi-Chr26 1480822 1482616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00107 13 327 B3 DNA Binding Superfamily AT3G18990 27.401 2.17e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi26g00107 B3 3.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00107 - - aprc:113871917 330.102