Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00106 ATGGTTGGAAGTACTGCTATTCTGCCAATGATCCGTTTCTTCAAGATTATTCTAAAAACTAATCTTGAAAGGCTTAAAATACCTAATATGTTTACAAGGAGATATGGAGGCAACCTCTCAGATCCAGTGTTTTTGAAGCCTCCAGATGGCACTGGATGGAAAATAGAGTTGGTAAAACAGAACGGTGAGGTTTGGTTTGGAAAGGGTTGGGAAAAATTTGCTCAAAATTACTCTCTGGATCATGGATATTTGGTGCTGTTTACATATAAAGGAACTTGCCAGTTTGATGTAGTTATACTTGGCAAGAGTGCTCTAGAAATAGATTATCCTCTGTGTAACACTTTTGATCAGGATCAGAGTGTTGATGATGAATCAGTTGAAATTTTGGATGAATTGCCAAATAAGGATGCTGAGGCTGGACAGAAGCCATTTTATTCTCATAAGAAAATGAGAGGTGAGAATGAGATTGAGAAAGCTACTCAAAGAACTTCATCGTTGAATTGGCCAAGGGATGCTAGAGCTCAGGAAGTAGCTGAAAAATTCGACTCAAACAATCCTTTTTTCACGGTTTGCATAAAGTCTATTGTTCTGAAAAAATGTAGGGTGAGTGTACCAAAATTATTACAAGGTTATATTGAGAAGAAGAATGAGTATGTGACTCTGCAGATTGGGAAAAGATCATGGAATGTGAAGTTGCTCTGTCGTCATGGCCATACAGGCCATCTCTCTGCTGGTTGTGGCAGAGGAAATGGAAATGCTATTCTGCCTGTCCGTTTCTTCAAGATTATTCTTAAAACTAATCTTCAAAGGCTTAAAATACCCAATGTGTTTACAAGGAAATATGGAGGTGATCTGTCAAATCCTGTGTTTGTCAAGCCTCCTGATGGCACTAAATGGGAAATAGAGTGGACAAAACAGAATGGAACTTCCCAGTTTGATGTACTAATACTTAACCAGAGTGCTGTAGAAATAGATTATCCTTTACAAGACACTTTTGATGATCAGAGTGATGATGATAAATCAATTGAAATTTTGGATGAATGGCCACGTCAGAAGGCTATACACATGAGGCCATTAATTTCTCCTAGACCTCATAAGAAAATGAGAGGTGATAAGGCTAATCAAAGAACTTCATCATTGAATTGGCCAAGCAATGCTAGAGCTAGGGAAGTAGCTGAAAATTTCGTCTCTAACAATCCTTTTTTCACAATTCCCATAAAGGCTGTCCATGTGGCAGAAAATCCGTTGTATGTACCAGATTTGAAAGGTGTTGTTGGAAGCGAGGATAAGTATGTTATGCTGCAGATAGGGAAAAGATCATGGGATGTGAAGTTGGTTGGTGGTCCAAATGGAGGTCGCAGATTCTCTGCTGGTTGGTCTGTGTTTGCAATGGAAAGTGAGTTGCAACCAGGAGACGTTTGTGTCTTTGAACTCATAAACACACAAGATTCAATTTTTAAGGTTCATGTTTACAAACGCTCCAGTTAA 1488 0.3871 MVGSTAILPMIRFFKIILKTNLERLKIPNMFTRRYGGNLSDPVFLKPPDGTGWKIELVKQNGEVWFGKGWEKFAQNYSLDHGYLVLFTYKGTCQFDVVILGKSALEIDYPLCNTFDQDQSVDDESVEILDELPNKDAEAGQKPFYSHKKMRGENEIEKATQRTSSLNWPRDARAQEVAEKFDSNNPFFTVCIKSIVLKKCRVSVPKLLQGYIEKKNEYVTLQIGKRSWNVKLLCRHGHTGHLSAGCGRGNGNAILPVRFFKIILKTNLQRLKIPNVFTRKYGGDLSNPVFVKPPDGTKWEIEWTKQNGTSQFDVLILNQSAVEIDYPLQDTFDDQSDDDKSIEILDEWPRQKAIHMRPLISPRPHKKMRGDKANQRTSSLNWPSNARAREVAENFVSNNPFFTIPIKAVHVAENPLYVPDLKGVVGSEDKYVMLQIGKRSWDVKLVGGPNGGRRFSAGWSVFAMESELQPGDVCVFELINTQDSIFKVHVYKRSS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00106 495 Gene3D - 256 316 IPR015300 -
Sebi26g00106 495 Gene3D - 10 104 IPR015300 -
Sebi26g00106 495 PANTHER B3 DOMAIN-CONTAINING 308 486 - -
Sebi26g00106 495 ProSiteProfiles B3 DNA-binding domain profile. 439 494 IPR003340 GO:0003677
Sebi26g00106 495 SUPERFAMILY DNA-binding pseudobarrel domain 258 326 IPR015300 -
Sebi26g00106 495 Gene3D - 383 494 IPR015300 -
Sebi26g00106 495 Gene3D - 169 248 IPR015300 -
Sebi26g00106 495 SMART B3_2 13 103 IPR003340 GO:0003677
Sebi26g00106 495 SMART B3_2 402 494 IPR003340 GO:0003677
Sebi26g00106 495 SUPERFAMILY DNA-binding pseudobarrel domain 397 494 IPR015300 -
Sebi26g00106 495 Pfam B3 DNA binding domain 403 493 IPR003340 GO:0003677
Sebi26g00106 495 Pfam B3 DNA binding domain 20 98 IPR003340 GO:0003677
Sebi26g00106 495 CDD B3_DNA 12 100 IPR003340 GO:0003677
Sebi26g00106 495 SUPERFAMILY DNA-binding pseudobarrel domain 11 103 IPR015300 -
Sebi26g00106 495 CDD B3_DNA 432 492 IPR003340 GO:0003677
Sebi26g00106 495 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00106 Sebi-Chr26 1475000 1478162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00106 9 143 B3 DNA Binding Superfamily AT4G01580 32.847 3.99e-20 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi26g00106 B3 3.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00106 - - aprc:113871917 397.897