Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00091 ATGGTAACAGATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACATAACCTGCCTTGGAAGCTAAAACAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGTGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGAATCAAAAAGCATTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGACGAGACAGTTTCATCACCCACAGGGCTTTCTGTGATGCATTGGCTCAAGAGAGTGCAAGACAGCCACCAAACCTGAGTGGTGGAATTGGCAGTCACCTATATGGGAGTAGCAGCAACAACATGGCTTTAGGCCTATCTCAGGTGGTGGGTCCCCAATTGTCCAACATGCAAGACACCCAATCCCCAACTGAACAACTCTTACGACTCGGCGCTCGAACCGGACAATTTGACCACATTCTCCCACCACCACCAGCAGCACCCTCACCTTTCAGTAGACCCTCTCCACCTAATTCCTTCTTCATCCCTGATCAATCCAACCAAAATTACCACCCTGACAAGCCATTGATCCACCACCAGCAAGGACTAATGCAATTGTCTCATGACCTTAACAATCACAACAATTCCCCTTCCAGTAATAACCTCTTCAACCTTCCCTTCCTTTCAAGTAACAACAGCACTAACAGCAGCAACAACTCCTTCTCTGAACACTTCAACAACGGAAACGACGTCGGTTCCAATTTCTTCACTGCAGGAGGAGGAGGTGGTGTGATAACAACTTCGAGCGCGCCTTCTCTCTTCAGCGCATCGCTCCAAAACAACAACGCAATCTCTCACATGTCAGCAACTGCACTCCTTCAGAAAGCGGCTCAAATGGGTGCAACTTCCAGTAACGGCACAGCCTCGTTGTTGAAAAGCTTCGGAAGCAGTTCGTCCGCGAGCAGTGGTGGAACGAAATCTGATCATCATCAGAGGGGGAATATGAAAGAAATGCTGCGGCGCCGTCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGAGAAGAGGAAAAAATCATCAGAAAGTACAAAGGGATTTCAACTTGTTCCATTCAAACTTGACTGTCTACCTCATCTAATTAAGGCTCTTGAGATCAGGCTTAGGGAAGCATGTGGGAATTTCTGGATTTTACTAATAGCGCAAGCAAATTAG 1383 0.4707 MVTDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSGGIGSHLYGSSSNNMALGLSQVVGPQLSNMQDTQSPTEQLLRLGARTGQFDHILPPPPAAPSPFSRPSPPNSFFIPDQSNQNYHPDKPLIHHQQGLMQLSHDLNNHNNSPSSNNLFNLPFLSSNNSTNSSNNSFSEHFNNGNDVGSNFFTAGGGGGVITTSSAPSLFSASLQNNNAISHMSATALLQKAAQMGATSSNGTASLLKSFGSSSSASSGGTKSDHHQRGNMKEMLRRRQGNLLEVVEGIFSEKRKKSSESTKGFQLVPFKLDCLPHLIKALEIRLREACGNFWILLIAQAN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00091 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 391 IPR031140 -
Sebi26g00091 460 MobiDBLite consensus disorder prediction 368 390 - -
Sebi26g00091 460 MobiDBLite consensus disorder prediction 215 237 - -
Sebi26g00091 460 Gene3D Classic Zinc Finger 3 71 - -
Sebi26g00091 460 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Sebi26g00091 460 FunFam protein indeterminate-domain 5, chloroplastic-like 77 156 - -
Sebi26g00091 460 MobiDBLite consensus disorder prediction 216 232 - -
Sebi26g00091 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Sebi26g00091 460 SMART c2h2final6 99 119 IPR013087 -
Sebi26g00091 460 SMART c2h2final6 64 94 IPR013087 -
Sebi26g00091 460 SMART c2h2final6 23 45 IPR013087 -
Sebi26g00091 460 Gene3D Classic Zinc Finger 77 156 - -
Sebi26g00091 460 FunFam protein indeterminate-domain 12-like 2 70 - -
Sebi26g00091 460 Pfam Zinc-finger double-stranded RNA-binding 23 45 IPR022755 -
Sebi26g00091 460 MobiDBLite consensus disorder prediction 368 383 - -
Sebi26g00091 460 SUPERFAMILY beta-beta-alpha zinc fingers 22 119 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00091 Sebi-Chr26 1310056 1315043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00091 6 354 IDZ Gene Family AT2G02070 55.190 1.87e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi26g00091 zf-C2H2_jaz 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00091 K25870 - gmx:100786121 478.404