Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00068 ATGGCCGCCACCACGACGCGGTGGCCGACTCAGCAACCTCAACCGAGTCAGTGGACTCGTTACCAAGACAAACTCTTTGAGCGAGCGCTATTGACCGTGTCCGATGACCAGCCGGACCGGTGGGAGAAGATCGCCGAGCAGGTTCCTGGAAAGTCGGCGGCGGAGGTGAGGAACCACTACGAGGCCTTGGTTCACGACGTGTATGAGATCGATTCAGGCCGAATCGAGGTTCCGAGTTACTCAGATGACTCAGCGGCGGATTGTGGATTGTCAAATTGGGATTCTTCTAATCAGATCTCTTTCGGGTCGAAACCTAAACATAGCGAAAACGATAGGAAGAAAGGGACACCGTGGACTGAAGAGGAACATAGGCTGTTTCTCATTGGTCTGAGCAAATTTGGCAAGGGAGATTGGAGAAGCATATCAAGAAATGTTGTTGTGTCAAGAACACCAACTCAAGTAGCTAGCCATGCTCAGAAATACTTCCTCCGCCAGAATTCGGTGAAGAAAGAGAGGAAGCGATCAAGCATCCATGACATAACCACAGTGGATAGTAACTCAGTGCCTGTCCCCATTGATCAGAATTGGGTTCCTCCTCCAGGTGGTTCAATGCAGCAATCACAAGAAATGCAGCAATACCCATCAAACAATTTGCATGATCATATGGGTAGATTTGGGTACTCAAACTTTGGGTTTTAA 699 0.4907 MAATTTRWPTQQPQPSQWTRYQDKLFERALLTVSDDQPDRWEKIAEQVPGKSAAEVRNHYEALVHDVYEIDSGRIEVPSYSDDSAADCGLSNWDSSNQISFGSKPKHSENDRKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVSRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSMQQSQEMQQYPSNNLHDHMGRFGYSNFGF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00068 232 ProSiteProfiles Myb-like domain profile. 10 64 IPR001005 -
Sebi26g00068 232 CDD SANT 117 162 IPR001005 -
Sebi26g00068 232 CDD SANT 18 64 IPR001005 -
Sebi26g00068 232 FunFam Transcription factor SRM1 10 77 - -
Sebi26g00068 232 Gene3D - 116 168 - -
Sebi26g00068 232 Pfam Myb-like DNA-binding domain 16 60 IPR001005 -
Sebi26g00068 232 Pfam Myb-like DNA-binding domain 117 162 IPR001005 -
Sebi26g00068 232 SUPERFAMILY Homeodomain-like 112 167 IPR009057 -
Sebi26g00068 232 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 217 IPR043363 -
Sebi26g00068 232 MobiDBLite consensus disorder prediction 97 117 - -
Sebi26g00068 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 166 IPR017930 -
Sebi26g00068 232 SMART sant 114 164 IPR001005 -
Sebi26g00068 232 SMART sant 14 66 IPR001005 -
Sebi26g00068 232 NCBIfam myb-like DNA-binding domain, SHAQKYF class 113 165 IPR006447 GO:0003677
Sebi26g00068 232 ProSiteProfiles SANT domain profile. 113 166 IPR017884 -
Sebi26g00068 232 Gene3D - 10 77 - -
Sebi26g00068 232 FunFam transcription factor MYB1R1 116 167 - -
Sebi26g00068 232 ProSiteProfiles Myb-like domain profile. 110 162 IPR001005 -
Sebi26g00068 232 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00068 Sebi-Chr26 1094949 1096389 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi26g00068 Myb_DNA-binding 7.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00068 - - gmx:548010 368.622