Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00064 ATGCTTCCCATCACCTGCATTCTTTTAATGTGCCTCCTCCTCAGTTCTTTCTCACCCCCAATCAAAGCCAAACCCTTCTCAAACCTCACCTTGCCCCACCAACACCCTTACCCTGAAGCTGTGGTTCATGAAGTTCAACGGAAAATCAATGTGTCACTCTCCAGAAGGCAAATGCTCTCAAAGGACCAAGCTACTTCATGTCTCACAGGAAACCCAGTGGACGATTGCTGGCGTTGCGACCCAAACTGGGCGGCGAACCGTCAGAAGCTGGCGGATTGCGGCATCGGTTTCGGACGCGCCGCCATGGGCGGAAAAGGCGGTCAGATCTACATCGTAACCGATTCCTCCGATAGGGACCCAGCGAACCCCGTTCCAGGAACCCTCCGTCACGCCGTTATCCAAGACGAACCGTTATGGATCGTTTTCGCCGCCGACATGACCATAAATCTGAGGCATGAACTAATCTTCAACAGCTTCAAAACCGTTGACGGTCGCGGCGCTAACGTCCACGTCACCGGCCACGGCTGCATAACGCTCCAGTACGTGTCCAACGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGTAACACTAACATACGCGCCAGTCCAACGCATGTAGGATGGAGAGGCGTATCGGACGGTGATGGGATATCCATCTTCGGATCAAGGAACATCTGGATCGACCATTGTTCACTCTCTTACTGCACGGACGGCTTGATCGATGCCATCATGGGGTCCACTGCTATAACCATATCTAACAACCATTTCGCGCACCACGATGAGGTCATGCTCCTTGGCCACAACGATAAGTACTCGCCAGATAGAGGAATGCAGGTTACCATTGCGTTCAATCACTTCGGTGAAGGGCTTGTTCAGCGAATGCCACGTTGCAGGCTCGGTTATATACATGTAGTTAACAATGATTTCACGCAGTGGGAGATGTATGCTATCGGCGGTAGCGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCACCGATCCTAATGCCAAAGAGGTGACGAAGCGCGTGGACACAGACGAGAGACAGTGGAGTGATTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTCTTTGTACCATCGGGTGCAGGGCTCAGTGCTCAGTACGCACAAGCGTCCAGTGTGCAACCCAAATCAGCGGTGCAAATTGACCAGCTCACAATGTACTCAGGAGTCTTCGGTGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGTGGTGGGACCGTAACCGGAGCCACCAGCAAGGGCAACAGTGAGGGTTCCAGCAGTGACGATGGGGACTTCTTCGAATAA 1356 0.5243 MLPITCILLMCLLLSSFSPPIKAKPFSNLTLPHQHPYPEAVVHEVQRKINVSLSRRQMLSKDQATSCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRAAMGGKGGQIYIVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLRHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPTDPNAKEVTKRVDTDERQWSDWNWRTEGDIMVNGAFFVPSGAGLSAQYAQASSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNSEGSSSDDGDFFE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00064 451 Gene3D - 70 412 IPR012334 -
Sebi26g00064 451 SUPERFAMILY Pectin lyase-like 57 386 IPR011050 -
Sebi26g00064 451 Pfam Pectate lyase 153 334 IPR002022 -
Sebi26g00064 451 MobiDBLite consensus disorder prediction 418 451 - -
Sebi26g00064 451 MobiDBLite consensus disorder prediction 428 445 - -
Sebi26g00064 451 SMART amb_all 145 342 IPR002022 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Sebi26g00064 451 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Sebi26g00064 451 PANTHER PECTATE LYASE 18-RELATED 33 411 IPR045032 GO:0030570
Sebi26g00064 451 FunFam Pectate lyase 70 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00064 Sebi-Chr26 999528 1004564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00064 1 446 Polysaccharide Lyase AT3G53190 66.370 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00064 K01728 - gmx:100808438 808.52